Locus 4434

Sequence ID X_DroMel_CAF1
Location 11,715,227 – 11,715,318
Length 91
Max. P 0.511346
window7284

overview

Window 4

Location 11,715,227 – 11,715,318
Length 91
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 77.71
Mean single sequence MFE -23.11
Consensus MFE -17.33
Energy contribution -17.22
Covariance contribution -0.11
Combinations/Pair 1.19
Mean z-score -0.84
Structure conservation index 0.75
SVM decision value -0.04
SVM RNA-class probability 0.511346
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11715227 91 - 22224390
CGAGAAGCUCGUCCAGGAUGGCGUAUAUACCUGCGCCUACACCUUGCAUGAUGUGGGUUCA-AGAUCCGU-------UUUAAUUGAAAUUUUCAACUCA
.(((((((((((.((((..((((((......)))))).....)))).))))...(((((..-.)))))))-------))...((((.....))))))). ( -21.40)
>DroGri_CAF1 8157 88 - 1
CGAGAAGCUCGUCGAGGAUGGCGUCUACCUGUGCGCCUAUGCCCUGCACGAAGUGAGCUAA-CAAGCUAA--------UC-AUUUAACUAAUCGUCUG-
(((..((.((((((.((..(((((........)))))....)).)).)))).(..((((..-..))))..--------.)-......))..)))....- ( -19.90)
>DroSec_CAF1 9228 91 - 1
CGAGAAGCUCGUCCAGGAUGGCGUGUACACCUGCGCCUACACCUUGCAUGAUGUGGGUUCU-AGAUCCAU-------UUCAAUUCAAAUUUUCCACUCA
.(((......((..(((..(((((........)))))....))).)).(((.(((((((..-.)))))))-------.)))..............))). ( -22.30)
>DroSim_CAF1 7764 91 - 1
CGAGAAGCUCGUCCAGGAUGGCGUGUACACCUGCGCCUACACCUUGCAUGAUGUGGGUUCU-AGAUCCAU-------UUCAAUUCAAAUUUUCCACUCA
.(((......((..(((..(((((........)))))....))).)).(((.(((((((..-.)))))))-------.)))..............))). ( -22.30)
>DroEre_CAF1 7217 94 - 1
CGAGAAGCUCGUCCAGGAUGGCGUCUACACCUGCGCCUACACCUUGCACGAUGUGGGUUCC-CGCUCCAUUUUCCCU----ACUCGAAUUUCCCACUCA
((((.((.((((.((((..(((((........))))).....)))).)))).((((....)-)))..........))----.))))............. ( -24.70)
>DroYak_CAF1 7545 99 - 1
CGAGAAGCUCGUCCAGGAUGGCGUAUACACCUGCGCCUACACCUUGCACGAUGUGGGUUUCAAACUCCAAACGCCCUUUCAGUUUGAAUUUCUCACUCA
.(((..((((((.((((..((((((......)))))).....)))).)))).))(((.((((((((..............))))))))...))).))). ( -28.04)
>consensus
CGAGAAGCUCGUCCAGGAUGGCGUAUACACCUGCGCCUACACCUUGCACGAUGUGGGUUCA_AGAUCCAU_______UUCAAUUCAAAUUUUCCACUCA
.(((..((((((.((((..((((((......)))))).....)))).)))).)).((.........))...........................))). (-17.33 = -17.22 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:55 2006