Locus 4433

Sequence ID X_DroMel_CAF1
Location 11,713,456 – 11,713,549
Length 93
Max. P 0.658852
window7283

overview

Window 3

Location 11,713,456 – 11,713,549
Length 93
Sequences 6
Columns 93
Reading direction reverse
Mean pairwise identity 82.94
Mean single sequence MFE -30.87
Consensus MFE -23.19
Energy contribution -24.20
Covariance contribution 1.01
Combinations/Pair 1.35
Mean z-score -1.74
Structure conservation index 0.75
SVM decision value 0.26
SVM RNA-class probability 0.658852
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11713456 93 - 22224390
CCUGCCCAGUUGUGCAAUUUGGCUUCAUCACACUGUUUAGUCUGGCCUUCCCAUUGGCUCCGCUGCUGGCCCUGCUGAACAAUGUGAUUGAGG
...(((.((((....)))).)))(((((((((.((((((((..((((........(((......)))))))..)))))))).))))).)))). ( -32.40)
>DroGri_CAF1 6555 91 - 1
--UGCACAGUGGUGCAAUAUGGUUUCAUAACGUUAUUUAGCUUGGCAUUUCCACUGGCGCCGCUGCUGGGGCUGAUUAAUAAUGUUAUGGAAG
--(((((....)))))......(((((((((((((((((((((((.....)))(..(((....)))..)))))))...)))))))))))))). ( -30.80)
>DroSim_CAF1 5688 93 - 1
CCUGCGCAGUUGUGCAAUUCGGCUUCAUCACACUGUUUAGUCUGGCGUUUCCAUUGGCGCCGCUGCUGGCCCUGCUGAACAAUGUGAUUGAGG
..(((((....)))))......((((((((((.((((((((..((((((......))))))((.....))...)))))))).))))).))))) ( -35.00)
>DroEre_CAF1 5673 93 - 1
CUUGGGCAGUUGUGCAAUUCGGCUUCAUCACACUGUUUAGUUUGGCCUUCCCGUUGGCGCCGCUGCUGGCCCUGCUGAACAAUGUGAUCGAGG
.(((.((....)).))).....((((((((((.((((((((..((((........((((....))))))))..)))))))).)))))).)))) ( -31.90)
>DroYak_CAF1 5767 93 - 1
CUGCUGCAGUUGUGCAAUUCGGUUUCAUCACACUGUUCAGUUUGGCCUUCCCACUGGCGCCGCUGCUGGCCCUGCUGAACAAUGUGAUUGAGG
(((.((((....))))...))).(((((((((.((((((((..((((....((.((....)).))..))))..)))))))).))))).)))). ( -32.80)
>DroAna_CAF1 9488 93 - 1
CUCCUUCAGUUGUGCAGUUCGGGUUCAUCACACUGUUCAGCUUGGCCUUUCCCUUGGCCCCGCUUCUGGCCCUGCUUAAUAAUGUGAUCGAAG
.......................(((((((((.((((.(((..((((........(((...)))...))))..))).)))).)))))).))). ( -22.30)
>consensus
CUUGCGCAGUUGUGCAAUUCGGCUUCAUCACACUGUUUAGUUUGGCCUUCCCAUUGGCGCCGCUGCUGGCCCUGCUGAACAAUGUGAUUGAGG
..(((((....)))))......((((((((((.((((((((..((((....((.((....)).))..))))..)))))))).)))))).)))) (-23.19 = -24.20 +   1.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:54 2006