Locus 4432

Sequence ID X_DroMel_CAF1
Location 11,711,121 – 11,711,218
Length 97
Max. P 0.565542
window7282

overview

Window 2

Location 11,711,121 – 11,711,218
Length 97
Sequences 3
Columns 97
Reading direction reverse
Mean pairwise identity 93.64
Mean single sequence MFE -20.62
Consensus MFE -19.45
Energy contribution -19.45
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.52
Structure conservation index 0.94
SVM decision value 0.06
SVM RNA-class probability 0.565542
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11711121 97 - 22224390
UGAAAAUAUCAUAUAUAUAUUUUUUGAUCUACUAUGAACAUUUGCCCGCAGUGUGUGCCACUUACCUCGCCCCAAUCUGCACACGCUGGGCUGCCUG
.((((((((.......))))))))((.((......)).))...((((..(((((((((....................)))))))))))))...... ( -21.15)
>DroSec_CAF1 3266 89 - 1
UGAAAAUAUCAUAUAUAUAUU--UUGAUCUACUA------UUUGCCCGCAGUGUGUGCCACUUACCUCGCCACAAUCUGCACACGCUGGGCUGCCUG
..(((((((.......)))))--)).........------...((((..(((((((((....................)))))))))))))...... ( -20.35)
>DroSim_CAF1 3334 89 - 1
UGAAAAUAUCAUAUAUAUAUU--UUGAUCUACUA------UUUGCCCGCAGUGUGUGCCACUUACCUCGCCCCAAUCUGCACACGCUGGGCUGCCUG
..(((((((.......)))))--)).........------...((((..(((((((((....................)))))))))))))...... ( -20.35)
>consensus
UGAAAAUAUCAUAUAUAUAUU__UUGAUCUACUA______UUUGCCCGCAGUGUGUGCCACUUACCUCGCCCCAAUCUGCACACGCUGGGCUGCCUG
...........................................((((..(((((((((....................)))))))))))))...... (-19.45 = -19.45 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:53 2006