Locus 4431

Sequence ID X_DroMel_CAF1
Location 11,709,513 – 11,709,614
Length 101
Max. P 0.697537
window7281

overview

Window 1

Location 11,709,513 – 11,709,614
Length 101
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 89.31
Mean single sequence MFE -32.98
Consensus MFE -25.92
Energy contribution -26.36
Covariance contribution 0.44
Combinations/Pair 1.14
Mean z-score -1.61
Structure conservation index 0.79
SVM decision value 0.34
SVM RNA-class probability 0.697537
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11709513 101 - 22224390
CCCAGAUGCCCGACUAUCUGGCCGAUUGCCUGGGCCAGAUAGCAAUCAAUAAUAAUCCGGCAUCGAGUAACUCUGACUCGGCGCAUUCGGUGUGAUGAUAG
.((.((((((.((((((((((((.(.....).)))))))))).............)).))))))((((.......))))))(((((...)))))....... ( -34.61)
>DroSec_CAF1 1665 98 - 1
CCCAGAUGCCCGACUAUCUGGCCGAUUGCCUGGGCCAGAUAGCAACCAAU---AAUCCGGCAUCGAGUAACUCUGACUCGGCGCAUUCGAUGUGAUGAUAG
.((.((((((.((((((((((((.(.....).))))))))))........---..)).))))))((((.......))))))(((((...)))))....... ( -34.60)
>DroSim_CAF1 1733 98 - 1
CCCAGAUGCCCGACUAUCUGGCCGAUUGCCUGGGCCAGAUAGCAACCAAU---AAUCCGGCAUCGAGUAACUCUGACUCGGCGCAUUCGAUGUGAUGAUAG
.((.((((((.((((((((((((.(.....).))))))))))........---..)).))))))((((.......))))))(((((...)))))....... ( -34.60)
>DroEre_CAF1 1858 98 - 1
CCCAGGUGCCCGAUUAUCUGGCCGAUUGCCUGGGCCAGAUAGUACCCAAU---AAUCCGGAAUCGAUUGACUGUGACUCGGCGCAUUCGGCUUGAUGAUAG
............((((((.((((((.((((((((((((.((((..((...---.....)).....)))).))).).))))).))).)))))).)))))).. ( -32.00)
>DroYak_CAF1 1737 98 - 1
CCCACAUGCCCGAUUACCUGGCCGAUUGCCUCGGCCAGUUGGCACCCCAU---AAUCCGGAUUCGAGUAACCCUGACUCGGCGCAUUCAGUUUGAUGAUAG
.....(((((((((((.((((((((.....)))))))).(((....))))---))).)))..((((((.......)))))).))))(((......)))... ( -29.10)
>consensus
CCCAGAUGCCCGACUAUCUGGCCGAUUGCCUGGGCCAGAUAGCAACCAAU___AAUCCGGCAUCGAGUAACUCUGACUCGGCGCAUUCGGUGUGAUGAUAG
.((..((((((..((((((((((.........))))))))))......................((((.......)))))).))))..))........... (-25.92 = -26.36 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:52 2006