| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 11,705,723 – 11,705,843 |
| Length | 120 |
| Max. P | 0.722828 |
| Location | 11,705,723 – 11,705,843 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.28 |
| Mean single sequence MFE | -42.47 |
| Consensus MFE | -24.73 |
| Energy contribution | -25.68 |
| Covariance contribution | 0.95 |
| Combinations/Pair | 1.48 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.722828 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11705723 120 + 22224390 UACGUUCCACGAGGUGAUUCUGUUCGCUGGCCACAUAGCUGGCGCACAGAUUAAGAUGUGUUUGCAUGCGGGUACAUAUGUUGAUCAAAUGCUGCGAGUUUAGUCGCUCCAGAAUCUCUG ..((.....)).((.(((((((...((..((......))..))(((..((((((.((((((.(.(....).).)))))).))))))...))).((((......))))..))))))).)). ( -37.00) >DroVir_CAF1 25461 120 + 1 UACGCUCGACCAGGUGAUUCUGUUCGCUGGCCACAUGGCUGGCGCACAGAUUCAAAUGCGUCUGCAUGCGGCCGCAUAUAUUAAGCAAAUGCUGUGAAUGCAGGCGCUCCAGAAUUUCCG ............(((((.(((((.(((..(((....)))..))).))))).)))...(((((((((((((((.((.........))....)))))..)))))))))).)).......... ( -48.30) >DroGri_CAF1 24208 120 + 1 UGCGCUCCACGAGAUGAUUCUGUUCGCUGGCCACAUGGCUGGCACACAAAUUCAAAUGCGUCUGCAUCCGGCCGCAUAUAUUCAGCAAAUGCUGAGAAUGCAAACGCUCCAAGAUCUCUG ..........(((((((...(((..((..(((....)))..))..)))...))....((((.(((((.((....)......(((((....)))))).))))).))))......))))).. ( -36.20) >DroWil_CAF1 4867 120 + 1 UUCGCUCCACCAGAUGAUUUUGCUCACUGGCCACAUGAGUGGCGCAGAGAUUGAGAUGGGUUUGCAUGCGUGUGCAAAUAUUGGUUAAAUGCUGUGAAUGCAAACGUUCUAAAAUCUCAG ...((.....(((.(((......))))))(((((....))))))).((((((.(((.(.((((((((((((..((........))...)))).....)))))))).))))..)))))).. ( -35.20) >DroMoj_CAF1 19487 120 + 1 UGCGUUCCACGAGGUGAUUCUGCUCGCUGGCCACAUGGCUGGCGCACAGAUUCAAAUGGGUCUGCAUGCGGCUGCAUAUAUUCAGCAGAUGCUGCGAAUUCAAGCGCUCCAGAAUCUCGG .........((((((((.((((..(((..(((....)))..)))..)))).))...(((((.((((.(((.((((.........)))).))))))).)))))...........)))))). ( -44.90) >DroAna_CAF1 6388 120 + 1 UGCGCUCGACUAGGUGGUUUUGUUCGCUGGACACGUAGUUGGCGCACAGAUUCAGGUGUGUCUGCAUGCGAGUACAGAUAUUCACCAGGUGCUGCGAGUGCAGACGCUCCAGGAUCUCUG (((((.((((((.(((.((..(....)..))))).))))))))))).((((((.((.((((((((((.(((((((.............))))).)).)))))))))).)).))))))... ( -53.22) >consensus UGCGCUCCACGAGGUGAUUCUGUUCGCUGGCCACAUGGCUGGCGCACAGAUUCAAAUGCGUCUGCAUGCGGCUGCAUAUAUUCAGCAAAUGCUGCGAAUGCAAACGCUCCAGAAUCUCUG ............((.(((((((..((((((((....)))))))).............((((((((((.((...((((...........))))..)).))))))))))..))))))))).. (-24.73 = -25.68 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:50 2006