Locus 4426

Sequence ID X_DroMel_CAF1
Location 11,687,103 – 11,687,223
Length 120
Max. P 0.553715
window7276

overview

Window 6

Location 11,687,103 – 11,687,223
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 73.78
Mean single sequence MFE -52.02
Consensus MFE -24.22
Energy contribution -23.50
Covariance contribution -0.72
Combinations/Pair 1.50
Mean z-score -1.74
Structure conservation index 0.47
SVM decision value 0.04
SVM RNA-class probability 0.553715
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11687103 120 + 22224390
CUCCAUUCAUCUGGACGACUGGGCUGGUACAUCUGUAGCCAUAUGGAGGCGUCGACGCCCUGGCGGGUAGCAAAGGCGGCUGGAAAGCCAGGACGCAGCGUGGUGGUGAGCACCAGUGGC
.((((......))))(.((((((((..(((....)))(((((...(..(((((...(((...((.....))...)))((((....))))..)))))..)...))))).))).))))).). ( -47.90)
>DroPse_CAF1 305 120 + 1
GUCCACUCGCCUGGCUUGGCCGGCUGGAACACCUGCAGCCACAACGAGGCAUCUACGCCCUGCCUUGUGGCAAAGGCGGCCGGAAAGCCGGCACGCAGCGACGUUGUAAAGAGUGGCGGC
(.(((((((((.(((((..(((((((.....(((...(((((((.(.(((......)))...).)))))))..)))))))))).))))))))..(((((...)))))...)))))))... ( -58.50)
>DroGri_CAF1 311 120 + 1
CCCCACUCGUCCGGUCGUGCCGGCUGAAAUUGUUGCAGCCAGAUCGAUGCAUCCACACCCUGACGUGUCGCAAAUGCCGCCGGAUAGCCGGCGCGCAACGUGGUCGCAAACAACGGAGGC
((((..(((.((((.....)))).)))..(((((((.((((...((((((.((........)).))))))....(((((((((....)))))).)))...)))).)).))))).)).)). ( -44.90)
>DroWil_CAF1 10611 120 + 1
CGCCACUCAUCCGGCUUAGAUGGCUGAUACAUUUGCAGCCACAUGGAGGCAUCUACACCCUGGCGAGUGGCAAAUGCUGCUGGAUAUCCAGGACGCAAUGAUGUACUAAAUAAUGGUGGC
.(((((.(((.(((((.....))))).(((((((((.(((.......)))........((((((.((..((....))..)).)....)))))..)))..)))))).......)))))))) ( -42.20)
>DroAna_CAF1 305 120 + 1
UUCCACUCGUCUGGGCGACUCGGCUGGUACAUCUGCAGCCAGACGGAGGCGUCCACGCCCUGGCGAGUGGCAAACGCCGGCGGAAAGCCGGCACGCAGCGUCGUGUUGAACAGCAGGGGC
..(((((((((.(((((....(((((.........))))).((((....))))..))))).))))))))).....((((((.....)))))).....((.((.((((....)))).)))) ( -59.30)
>DroPer_CAF1 305 120 + 1
GUCCACUCGGUCGGCUUGGCCGGCUGGAACACCUGCAGCCACAACGAGGCAUCUACGCCCUGCCUUGUGGCAAAGGCGGCCGGAAAGCCGGCACGCAGCGACGUUGUAAAGAGUGGCGGC
(.((((((.((((((((..(((((((.....(((...(((((((.(.(((......)))...).)))))))..)))))))))).))))))))..(((((...)))))...)))))))... ( -59.30)
>consensus
CUCCACUCGUCCGGCCGAGCCGGCUGGAACAUCUGCAGCCACAUCGAGGCAUCUACGCCCUGGCGUGUGGCAAAGGCGGCCGGAAAGCCGGCACGCAGCGACGUGGUAAACAGCGGCGGC
..((..(((.(((((...))))).)))(((..((((.(((((.....(((......))).......))))).......(((((....)))))..))))....)))............)). (-24.22 = -23.50 +  -0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:47 2006