Locus 4421

Sequence ID X_DroMel_CAF1
Location 11,655,145 – 11,655,248
Length 103
Max. P 0.988463
window7266

overview

Window 6

Location 11,655,145 – 11,655,248
Length 103
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 96.49
Mean single sequence MFE -18.68
Consensus MFE -16.40
Energy contribution -16.60
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -2.03
Structure conservation index 0.88
SVM decision value 2.12
SVM RNA-class probability 0.988463
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11655145 103 + 22224390
AUUACCUCAUUUCUAUCUAUAUGUGGCGAAAUACCCGUUUAAUCAAUUGCCACCACACGUGGAAAAGUUUUGCCAACUGCAUAUGUAUAUUCAUUAUGCAUUU
.......................(((((((((....(......).....((((.....))))....)))))))))..((((((((......)).))))))... ( -19.10)
>DroSec_CAF1 28388 99 + 1
AUUACCUCAUUUCUAUCUAUAUGUGGCGAAAUACCCGUUUAAUCAAUUGCCACCACACGUGGAAAAGUUUUGCCAACUGCAUA----UAUUCAUUAUGCAUUU
.......................(((((((((....(......).....((((.....))))....)))))))))..((((((----.......))))))... ( -18.80)
>DroSim_CAF1 24895 99 + 1
AUUACCUCAUUUCUAUCUAUAUGUGGCGAAAUACCCGUUUAAUCAAUUGCCACCACACGUGGAAAAGUUUUGCCAACUGCAUA----UAUUCAUUAUGCAUUU
.......................(((((((((....(......).....((((.....))))....)))))))))..((((((----.......))))))... ( -18.80)
>DroEre_CAF1 32231 103 + 1
AUUACCUCAUUUCUAUCUAUAUAUGGCGAAAUACCCGUUUAAUCAAUUGCCACCACACGUGGAAAAGUUUUGCCAACUGCAUAUGUAUAUUCAUUAUGCAUUU
.......................(((((((((....(......).....((((.....))))....)))))))))..((((((((......)).))))))... ( -19.20)
>DroYak_CAF1 27837 103 + 1
AUUACCUCAUUUCUAUCUAUAUGUGGCGAAAUACCCGUUUAAUCAAUUGCAACCACACGUGGAAAAGUUUUGCCAACUGCAUAUAAAUAUUCAUUAUGCAUUU
.......................(((((((((....((..........))..(((....)))....)))))))))..((((((...........))))))... ( -17.50)
>consensus
AUUACCUCAUUUCUAUCUAUAUGUGGCGAAAUACCCGUUUAAUCAAUUGCCACCACACGUGGAAAAGUUUUGCCAACUGCAUAU__AUAUUCAUUAUGCAUUU
.......................(((((((((....(......).....((((.....))))....)))))))))..((((((...........))))))... (-16.40 = -16.60 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:39 2006