Locus 4420

Sequence ID X_DroMel_CAF1
Location 11,654,812 – 11,654,905
Length 93
Max. P 0.997768
window7265

overview

Window 5

Location 11,654,812 – 11,654,905
Length 93
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 93.11
Mean single sequence MFE -27.50
Consensus MFE -23.46
Energy contribution -23.46
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.44
Structure conservation index 0.85
SVM decision value 2.93
SVM RNA-class probability 0.997768
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11654812 93 - 22224390
CCCCCACAGAAUCGGGAGAG--UGCAAGGAGUGCAGCUGCAUCACUGCAUUCCUCAAUUGGCUUGGCACACGCGCAACACAAACA------AAAACAAUAA-
..(((........)))...(--(((.((((((((((........))))))))))....((((...)).)).))))..........------..........- ( -24.90)
>DroSec_CAF1 28056 99 - 1
CCCCCACAGAAUCGGGAGAG--UGGAAGGAGUGCAGCUGCAUCACUGCAUUCCUCAAUUGGCUUGGCACACGCGCAACACAAACAACAACAAAAACAAUAA-
...((((....((....)))--))).((((((((((........))))))))))...(((..(((((....)).)))..)))...................- ( -24.90)
>DroSim_CAF1 24555 100 - 1
CCCCCACAGAAUCGGGAGAG--UGGAAGGAGUGCAGCUGCAUCACUGCAUUCCUCAAUUGGCUUGGCACACGCGCAACACAAACAACAACAAAAACAAUAAU
...((((....((....)))--))).((((((((((........))))))))))...(((..(((((....)).)))..))).................... ( -24.90)
>DroEre_CAF1 30226 99 - 1
AGCCCACGGAAUCGGGGGAG--UGGGAGGAGUGCAGCUGCAUCACUGCAUUCCUCAAUUGGCUUGGCACACGCGCAACACAAACAAAAACAAAAACAAUAA-
..(((.((....)))))..(--((.(((((((((((........))))))))))).....((.((.....)).))..))).....................- ( -30.30)
>DroYak_CAF1 27517 101 - 1
CCCCCACAGAAUCGGGAGAGUGUGGGAGGAGUGCAGCUGCAUCACUGCAUUCCUCAAUUGGCUUGGCACACGCGCAACACAAACACAAACAAAAACAAUAA-
...(((((...((....)).)))))(((((((((((........)))))))))))..(((..(((((....)).)))..)))...................- ( -32.50)
>consensus
CCCCCACAGAAUCGGGAGAG__UGGAAGGAGUGCAGCUGCAUCACUGCAUUCCUCAAUUGGCUUGGCACACGCGCAACACAAACAAAAACAAAAACAAUAA_
..(((........)))..........((((((((((........))))))))))...(((..(((((....)).)))..))).................... (-23.46 = -23.46 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:38 2006