Locus 4413

Sequence ID X_DroMel_CAF1
Location 11,650,277 – 11,650,397
Length 120
Max. P 0.780595
window7251

overview

Window 1

Location 11,650,277 – 11,650,397
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 96.17
Mean single sequence MFE -39.82
Consensus MFE -34.48
Energy contribution -34.32
Covariance contribution -0.16
Combinations/Pair 1.03
Mean z-score -1.46
Structure conservation index 0.87
SVM decision value 0.56
SVM RNA-class probability 0.780595
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11650277 120 + 22224390
UGUGGCUGUUGUGCAAAAAUAUGCCGCUGGACAGGAUUAGAGUAAUGCUGCGGCGAACGGGAGCGAUCAUGAACGCUUACCAACCCAGCUGGUCGAGCUUUAUAAUUGUUGUGCGACAGA
.....((((((..(.......((((((.((.((..((....))..))))))))))......((((((.(((((.((((((((.......)))).))))))))).)))))))..)))))). ( -38.80)
>DroSec_CAF1 23617 120 + 1
UGUGGCUGUUGUGCAAAAAUAUGCCGCUGGACAGGAUUAGAGGAAUGCUGCGGCGAACGGGAGCGAUCAUGAACGCUUACCAACCCAGCUGGUCGAGCUUUAUAAUUGUUGUGCGACAGA
.....((((((..(((...((((..(((.(((((.(((.....))).)).((((....(((((((........))))).))......))))))).)))..))))....)))..)))))). ( -37.40)
>DroSim_CAF1 19736 120 + 1
UGUGGCUGUUGUGCAAAAAUAUGCCGCUGGACAGGAUUAGAGGAAUGCUGCGGCGAACGGGAGCGAUCAUGAACGCUUACCAACCCAGCUGGUCGAGCUUUAUAAUUGUUGUGCGACAGA
.....((((((..(((...((((..(((.(((((.(((.....))).)).((((....(((((((........))))).))......))))))).)))..))))....)))..)))))). ( -37.40)
>DroEre_CAF1 24164 120 + 1
UGUGGCUGUUGUGCAGAAAUAUGCCGCUGGACAGGAUUAGAGGAAUCCUGGGGCAAAUGGGAGCGACCACGAACGCUUACCAACCCAGCUGGUCGAGCUUUAUAAUUGUUGUGCGACAGA
.....((((((..(((...((((..(((.(((((((((.....))))))(((.....((((((((........))))).))).))).....))).)))..))))....)))..)))))). ( -42.60)
>DroYak_CAF1 23112 120 + 1
UGUGGCUGUUGUGCAAAAAUAUGCCGCUGGACAGGAUUAGAUGAAUCCUGGGGCAAAUGGGAGCGAUCACGAACGCUUACCAACCCAGCUGGUCGAGCUUUAUAAUUGUUGUGCGACAGA
.....((((((..(((...((((..(((.(((((((((.....))))))(((.....((((((((........))))).))).))).....))).)))..))))....)))..)))))). ( -42.90)
>consensus
UGUGGCUGUUGUGCAAAAAUAUGCCGCUGGACAGGAUUAGAGGAAUGCUGCGGCGAACGGGAGCGAUCAUGAACGCUUACCAACCCAGCUGGUCGAGCUUUAUAAUUGUUGUGCGACAGA
.....((((((..(((......((((((((.(((.(((.....))).)))........(((((((........))))).))...))))).)))(((.........))))))..)))))). (-34.48 = -34.32 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:25 2006