Locus 4412

Sequence ID X_DroMel_CAF1
Location 11,649,138 – 11,649,236
Length 98
Max. P 0.653825
window7250

overview

Window 0

Location 11,649,138 – 11,649,236
Length 98
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 80.83
Mean single sequence MFE -32.77
Consensus MFE -27.97
Energy contribution -27.67
Covariance contribution -0.30
Combinations/Pair 1.18
Mean z-score -1.29
Structure conservation index 0.85
SVM decision value 0.25
SVM RNA-class probability 0.653825
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11649138 98 - 22224390
GGAAAUCGGC------UUCAAGAUGCGGGUAGUGGCCAUGGUCAGUGGCGGCAAGGACAGCUGCUACAACAUGAUGCAGUGCGUCGCCGAGGGCCACGAAAUCG
.((.(((.((------........)).))).((((((.((((..((((((((.......)))))))).....(((((...)))))))))..))))))....)). ( -38.70)
>DroVir_CAF1 29714 98 - 1
CACACACACAUA------CAAAAUGCGCGUAGUAGCAAUGGUAAGUGGCGGCAAGGAUAGCUGCUACAAUAUGAUGCAGUGCGUCGCCGAGGGUCACGAAAUUG
...((.(.(((.------....))).).)).((..(..((((..((((((((.......)))))))).....(((((...)))))))))...)..))....... ( -25.60)
>DroPse_CAF1 23661 88 - 1
----------------ACCAAGAUGCGGGUCGUGGCCAUGGUCAGUGGCGGCAAGGAUAGCUGCUACAACAUGAUGCAAUGCGUUGCCGAGGGCCAUGAAAUCG
----------------.....(((.....((((((((.((((..((((((((.......)))))))).....(((((...)))))))))..)))))))).))). ( -34.80)
>DroGri_CAF1 25912 100 - 1
CCCAUCCAUCUA----AUCAAAAUGCGCGUUGUGGCAAUGGUGAGUGGCGGCAAGGAUAGCUGCUACAAUAUGAUGCAGUGCGUCGCCGAGGGCCACGAAAUUG
............----.............(((((((..((((..((((((((.......)))))))).....(((((...)))))))))...)))))))..... ( -33.10)
>DroMoj_CAF1 21874 104 - 1
CACACACAGAUAGGUCAUCAAGAUGCGCGUGGUGGCAAUGGUGAGUGGCGGCAAGGAUAGCUGCUACAACAUGAUGCAGUGCGUCGCCGAGGGUCACGAAAUUG
(((.(.((.....(....)....)).).)))(((((..((((..((((((((.......)))))))).....(((((...)))))))))...)))))....... ( -31.90)
>DroAna_CAF1 25519 86 - 1
------------------CAAGAUGCGGGUCGUGGCCAUGGUCAGCGGCGGCAAGGAUAGUUGCUACAACAUGAUGCAGUGCGUCGCCGAGGGCCACGAGAUCG
------------------.......(((.((((((((.((((..(..(((((.......)))))..).....(((((...)))))))))..))))))))..))) ( -32.50)
>consensus
C_CA__CA________AUCAAGAUGCGCGUAGUGGCAAUGGUCAGUGGCGGCAAGGAUAGCUGCUACAACAUGAUGCAGUGCGUCGCCGAGGGCCACGAAAUCG
...............................(((((..((((..((((((((.......)))))))).....(((((...)))))))))...)))))....... (-27.97 = -27.67 +  -0.30)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:24 2006