Locus 4411

Sequence ID X_DroMel_CAF1
Location 11,635,980 – 11,636,073
Length 93
Max. P 0.766176
window7249

overview

Window 9

Location 11,635,980 – 11,636,073
Length 93
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 94.72
Mean single sequence MFE -22.12
Consensus MFE -20.56
Energy contribution -20.56
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.21
Structure conservation index 0.93
SVM decision value 0.52
SVM RNA-class probability 0.766176
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11635980 93 + 22224390
UACAUAUCCGUAGGCU------AACCUAUUGAUUUGCGACUCCUCGGGGAUUUCGGGGCUUACAGUCGUCACAUUUAUGUGUAUACAUAUAUAAAAAAA
..((.(((.(((((..------..))))).))).))(((((((((((.....)))))).....))))).....(((((((((....))))))))).... ( -22.40)
>DroSec_CAF1 9264 92 + 1
UACAUAUCCGUAGGCU------AACCUAUUGAUUUGCGACUCCUCGGGGAUUUCGGGGCUUACAGUCGUCACAUUUAUGUGUAUACAUAUAUAAAA-AA
..((.(((.(((((..------..))))).))).))(((((((((((.....)))))).....))))).....(((((((((....))))))))).-.. ( -22.40)
>DroSim_CAF1 8587 92 + 1
UACAUAUCCGUAGGCU------AACCUAUUGAUUUGCGACUCCUCGGGGAUUUCGGGGCUUACAGUCGUCACAUUUAUGUGUAUACAUAUAUAAAA-AA
..((.(((.(((((..------..))))).))).))(((((((((((.....)))))).....))))).....(((((((((....))))))))).-.. ( -22.40)
>DroEre_CAF1 9744 98 + 1
UACAUAUCCGUAGGCUAAUGCUAACCUAUUGAUUUGCGACUCCUCGGGGAUUUCGGGGCUUACAGUCGUCACAGUUAUGUGUAUACAUAUAUAAAA-AA
..((.(((.(((((.((....)).))))).))).))(((((((((((.....)))))).....))))).......((((((....)))))).....-.. ( -21.20)
>DroYak_CAF1 8592 98 + 1
UACAUAUCCGUAGGCUAACGCUAACCUAUUGAUUUGCGACUCCUCGGGGAUUUCGGGGCUUACAGUCGUCACAGUUAUGUGUAUAGAUAUAUAAAA-AA
...(((((..(((((....))).............((((((((((((.....)))))).....))))))((((....))))))..)))))......-.. ( -22.20)
>consensus
UACAUAUCCGUAGGCU______AACCUAUUGAUUUGCGACUCCUCGGGGAUUUCGGGGCUUACAGUCGUCACAUUUAUGUGUAUACAUAUAUAAAA_AA
..((.(((.(((((..........))))).))).))(((((((((((.....)))))).....)))))......((((((((....))))))))..... (-20.56 = -20.56 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:24 2006