Locus 4401

Sequence ID X_DroMel_CAF1
Location 11,592,240 – 11,592,335
Length 95
Max. P 0.950756
window7225

overview

Window 5

Location 11,592,240 – 11,592,335
Length 95
Sequences 3
Columns 112
Reading direction forward
Mean pairwise identity 72.10
Mean single sequence MFE -34.73
Consensus MFE -20.89
Energy contribution -21.45
Covariance contribution 0.56
Combinations/Pair 1.08
Mean z-score -1.81
Structure conservation index 0.60
SVM decision value 1.40
SVM RNA-class probability 0.950756
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11592240 95 + 22224390
AUGUUAGCUUUUCGUCUGUGCAUCCGAUGAUAAGCAGCUGGAUGUCUUGCUGGCU----------------GGCUGACUGUCUGGGCUUGGCUCUGCCGUCGAGACGGUC-U
..(((((((....((..(.(((((((.((.....))..))))))))..)).))))----------------))).((((((((.(((..(((...)))))).))))))))-. ( -36.50)
>DroEre_CAF1 24373 82 + 1
AAGUUAGCUAUUCGUCUGUGCAUCCGAUGAUAAGCAGCUGGAUGGCUAGAUGGCU-----------------------------GGGAUGGCUGUGCCGUCGAGACGGUC-U
...(((((((((((.((((..(((....)))..)))).)))))))))))..((((-----------------------------(.((((((...))))))....)))))-. ( -31.60)
>DroYak_CAF1 24589 112 + 1
AUGUUGGCUUUUCGUCUGUGCAUCCGAUGAUAAGCAGCUGGAGGGCUAGAUGGCUAUGUGGCAAGGUGGCAAGGUGGCAGACUGGGCUUGGUUGUGCCGUCGAGACGGUAAU
...(((((((((((.((((..(((....)))..)))).)))))))))))(..((((...(((..(((.((......))..)))..)))))))..)(((((....)))))... ( -36.10)
>consensus
AUGUUAGCUUUUCGUCUGUGCAUCCGAUGAUAAGCAGCUGGAUGGCUAGAUGGCU_________________G_UG_C_G_CUGGGCUUGGCUGUGCCGUCGAGACGGUC_U
..((((((((((((.((((..(((....)))..)))).))))))))).((((((.........................................))))))..)))...... (-20.89 = -21.45 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:02 2006