Locus 44

Sequence ID X_DroMel_CAF1
Location 202,237 – 202,330
Length 93
Max. P 0.813639
window55

overview

Window 5

Location 202,237 – 202,330
Length 93
Sequences 4
Columns 98
Reading direction forward
Mean pairwise identity 86.74
Mean single sequence MFE -19.46
Consensus MFE -13.51
Energy contribution -14.57
Covariance contribution 1.06
Combinations/Pair 1.04
Mean z-score -2.13
Structure conservation index 0.69
SVM decision value 0.66
SVM RNA-class probability 0.813639
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 202237 93 + 22224390
AAAGGAUUCGGUCCGAUUACUUUAAAUUUAGUUGGAU----UUAUAACAUUCUGUUUUUAAUGUCUAAUUUUACUAUCUACCUAGAACCGAGUC-CAC
...(((((((((.(...............((((((((----....(((.....)))......))))))))..............).))))))))-).. ( -21.35)
>DroSec_CAF1 33201 93 + 1
AAAAGAUUCGGUCCGAUUCCUUUAAAUUUAGUUGGAU----UUAUAACAUUCUGUUGUUAAUGUCUAAUUUUAAUAUCUACCUAGAACCGAGUC-CAC
....((((((((.(...............((((((((----...(((((......)))))..))))))))..............).))))))))-... ( -20.55)
>DroSim_CAF1 34298 93 + 1
AAAAGAUUCGGUCCGAUUCCUUUAAAUUUAGUUGGAU----UUAUAACAUUCUGUUGUUAAUGUCUAAUUUUAAUAUCUACCUAGAACCGAGUC-CAC
....((((((((.(...............((((((((----...(((((......)))))..))))))))..............).))))))))-... ( -20.55)
>DroYak_CAF1 32670 94 + 1
AAAUGCUUCGGUG----UACUUCCAAUUUAGUUGGAUCAUUGUAUGACAUUCUGUUUUUAAAGACUAAAUUUAACAUCUAGCUAGAACCGAGUCCCAC
......((((((.----.........((((((((((....(((.(((.(((..((((....))))..)))))))))))))))))))))))))...... ( -15.40)
>consensus
AAAAGAUUCGGUCCGAUUACUUUAAAUUUAGUUGGAU____UUAUAACAUUCUGUUGUUAAUGUCUAAUUUUAAUAUCUACCUAGAACCGAGUC_CAC
....((((((((.................((((((((......(((((.....)))))....))))))))......(((....))))))))))).... (-13.51 = -14.57 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:12 2006