Locus 4398

Sequence ID X_DroMel_CAF1
Location 11,585,656 – 11,585,751
Length 95
Max. P 0.664814
window7222

overview

Window 2

Location 11,585,656 – 11,585,751
Length 95
Sequences 3
Columns 101
Reading direction reverse
Mean pairwise identity 73.40
Mean single sequence MFE -24.65
Consensus MFE -17.74
Energy contribution -17.08
Covariance contribution -0.66
Combinations/Pair 1.19
Mean z-score -1.19
Structure conservation index 0.72
SVM decision value 0.28
SVM RNA-class probability 0.664814
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11585656 95 - 22224390
CAUCGCCCGUUUCAAAGACAUCCAUCGGCACACUUUGUCCGCCCGCUGCCUCACCA--CCUCCUUGGCCAUAAGACA----UACCUGGUCGGGAGGUGGAC
....((..(((.....)))......(((.((.....)))))...)).......(((--((((((.(((((.......----....)))))))))))))).. ( -28.20)
>DroSec_CAF1 17524 99 - 1
CAUUGCCCGUUUCAAAGACAUCCAUCGGCACACUUUGUCCGCCCGCUGCUUCACCU--CCUCCUUGGCCACCAGACAUACAUACCUGGUCGGGAGGCGGAC
...((((...................))))......((((((((.........((.--.......))(((((((..........))))).))).))))))) ( -24.71)
>DroEre_CAF1 17351 76 - 1
--------------------UCCAUCGGCACACUUUGUCCGCCCGCUGCCCCACCAACCCCCCCUUACC-CCAGACU----CACCUGGUCGGGAGGCGGAC
--------------------.....(((.((.....))))).(((((.(((.((((.......((....-..))...----....)))).))).))))).. ( -21.04)
>consensus
CAU_GCCCGUUUCAAAGACAUCCAUCGGCACACUUUGUCCGCCCGCUGCCUCACCA__CCUCCUUGGCCACCAGACA____UACCUGGUCGGGAGGCGGAC
.........................(((.((.....))))).(((((.(((.(((...............................))).))).))))).. (-17.74 = -17.08 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:59 2006