Locus 4397

Sequence ID X_DroMel_CAF1
Location 11,572,942 – 11,573,053
Length 111
Max. P 0.699128
window7221

overview

Window 1

Location 11,572,942 – 11,573,053
Length 111
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 77.18
Mean single sequence MFE -42.35
Consensus MFE -21.62
Energy contribution -22.35
Covariance contribution 0.73
Combinations/Pair 1.33
Mean z-score -1.92
Structure conservation index 0.51
SVM decision value 0.35
SVM RNA-class probability 0.699128
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11572942 111 + 22224390
CAUCAUCUAUUUCCUGGCCCAGGGCAUCUUUAUGUGGUUCCCAACCAUCCUGGAUGAGCUGGGCACACGUAAUGGCGAAAAUACGCUACUCUGCACUGUCCUGCAGGGUUU
........(((.(.((((((((..(((((....(((((.....)))))...)))))..)))))).)).).)))((((......))))((((((((......)))))))).. ( -38.30)
>DroVir_CAF1 18264 111 + 1
CCUCAUCUACGGCAUCGCCCAGGGCAUCUUCAUGUGGUUCCCCACCAUACUCAACGAGCUGGGCAAGCAGAGCGCCCACGGCUCGCUGCUCUGCACCGUGCUACAGGGCUU
(((....(((((....((((((..........((((((.....))))))(((...)))))))))..((((((((((...))).....))))))).)))))....))).... ( -40.20)
>DroPse_CAF1 17125 111 + 1
CCUCAUCUACGGCAUGGCGCAGGGCAUCUUCAUGUGGUUCCCCACUAUUCUUGAUGAGCUGGGAUCGCGGGGCGGACAGGCAACGCUGCUCUGCCAAGUGCUGGAGGAGUU
((((.....(((((((((.(((..((((.....((((....)))).......))))..))).).))(((((((((...(....).)))))))))...)))))))))).... ( -42.80)
>DroGri_CAF1 19695 111 + 1
CAUCAUCUAUGGCAUUGCCCAGGGCAUAUUCAUGUGGUUCCCCACCAUACUCAACGAGCUGGGCAAGCACAGUGGUGAGGGCUCAUUGCUCUGCACCAUCUUGCAAGGCUU
..........(((.((((((((..........((((((.....))))))(((...)))))))))))(((..(((((((((((.....))))).))))))..)))...))). ( -42.20)
>DroAna_CAF1 18112 111 + 1
CCUCAUCUACUUCCUGGCCCAGGGCAUCUUUAUGUGGUUCCCCACCAUCCUGGAUGAGCUGGGCACGCGUGGUGGCGAGGACACGCUCCUCUGCAGUGUCCUCCAGGGUCU
...........(((((((((((..(((((....(((((.....)))))...)))))..))))))..((......))((((((((((......)).)))))))))))))... ( -47.80)
>DroPer_CAF1 17502 111 + 1
CCUCAUCUACGGCAUGGCGCAGGGCAUCUUCAUGUGGUUCCCCACUAUUCUUGAUGAGCUGGGAUCGCGGGGCGGACAGGCAACGCUGCUCUGCCAAGUGCUGGAGGAGUU
((((.....(((((((((.(((..((((.....((((....)))).......))))..))).).))(((((((((...(....).)))))))))...)))))))))).... ( -42.80)
>consensus
CCUCAUCUACGGCAUGGCCCAGGGCAUCUUCAUGUGGUUCCCCACCAUACUCGAUGAGCUGGGCACGCGGAGCGGCCAGGACACGCUGCUCUGCACAGUCCUGCAGGGCUU
.....(((........((((((..((((.....(((((.....)))))....))))..))))))..(((.((((((........)))))).)))...........)))... (-21.62 = -22.35 +   0.73)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:58 2006