| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 11,570,193 – 11,570,313 |
| Length | 120 |
| Max. P | 0.567247 |
| Location | 11,570,193 – 11,570,313 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 84.94 |
| Mean single sequence MFE | -41.13 |
| Consensus MFE | -30.76 |
| Energy contribution | -31.35 |
| Covariance contribution | 0.59 |
| Combinations/Pair | 1.40 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.567247 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11570193 120 - 22224390 ACCCUGUUGCUCUACAUGGGCGGCGUUAGCGGCAUGGGCUUGACUCUGGCUGUCUACUACCUGUUCAUCUGGGAUUCACGCAUGCCGCCGCUGCCCGUGUUCAAGCACACGCAUCCGAUU .....((((((..((((((((((((...((((((((.(...((..(..(.((...((.....)).)).)..)..))..).))))))))))))))))))))...)))).)).......... ( -49.30) >DroVir_CAF1 15538 120 - 1 ACCCUAAUCCUCUAUAUGGGCGGCGUCAGCGGCAUGGGCCUAACGCUGGCCAUGUACUAUCUAUUCAUCUGGGACUCACGCAUGCCGCCGCUGCCCGUCUUCAAGCAUACGCAUCCAAUU ...............((((((((((...((((((((((((.......))))........((((......)))).......))))))))))))))))))......((....))........ ( -42.50) >DroGri_CAF1 15946 120 - 1 ACCCUAAUGCUCUACAUGGGCGGUGUCAGCGGCAUGGGCCUAACUCUGGCCAUGUACUAUAUGUUCAUCUGGGACUCACGGAUGCCACCGCUGCCAGUGUUCAAGCAUACGCAUCCCAUU ......(((((.....((((((.((.(((((((((((.((.......)))))))...........((((((.......))))))...)))))).)).)))))))))))............ ( -38.40) >DroWil_CAF1 37019 120 - 1 ACACUGAUCCUCUAUAUGGGCGGAGUCAGUGGAAUGGGAUUAACGCUAGCCAUGUAUUACUUUUUCAUCUGGGAUUCACGUAUGCCGCCAUUGCCCAUAUUCAAGCAUACGCAUCCCAUU .(((((((((.((.....)).))).))))))..(((..(.(((..(.......)..)))...)..))).((((((...(((((((...................))))))).)))))).. ( -30.91) >DroMoj_CAF1 16616 120 - 1 ACCCUGGUGCUCUAUAUGGGCGGUGUCAGCGGCAUGGGUCUAACCCUGGCCAUGUACUAUCUGUUCAUCUGGGACUCGCGUAUGCCGCCGCUGCCCAUCUUCAAGCAUACGCAUCCCAUU ......(((((....((((((((((...((((((((.((.....((..(..(((.((.....)).))))..))....)).)))))))))))))))))).....)))))............ ( -44.20) >DroAna_CAF1 15117 120 - 1 ACCCUGAUGCUCUACAUGGGCGGGGUCAGUGGCAUGGGCCUAACCCUGGCGGUCUACUAUCUCUUUAUCUGGGACUCUCGGAUGCCGCCACUGCCCGUCUUCAAGCACACCCAUCCCAUC ....((.((((......(((((((..(((((((..(((.....))).((((.(((....((((.......)))).....)))))))))))))))))))))...))))))........... ( -41.50) >consensus ACCCUGAUGCUCUACAUGGGCGGCGUCAGCGGCAUGGGCCUAACCCUGGCCAUGUACUAUCUGUUCAUCUGGGACUCACGCAUGCCGCCGCUGCCCGUCUUCAAGCAUACGCAUCCCAUU ......(((((....((((((((((...((((((((((((.......))))........(((........))).......)))))))))))))))))).....)))))............ (-30.76 = -31.35 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:56 2006