Locus 4390

Sequence ID X_DroMel_CAF1
Location 11,553,559 – 11,553,679
Length 120
Max. P 0.826904
window7209

overview

Window 9

Location 11,553,559 – 11,553,679
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 95.28
Mean single sequence MFE -30.17
Consensus MFE -28.64
Energy contribution -28.53
Covariance contribution -0.10
Combinations/Pair 1.11
Mean z-score -1.92
Structure conservation index 0.95
SVM decision value 0.70
SVM RNA-class probability 0.826904
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11553559 120 - 22224390
CUUUGAGUAGCACACGUGUGUACUCGAUUAUGGAACCAGCAGCUGUUCUCGAAUUAGUUAAUGCUUGAACGCUGGAAUAGUUUUGUAAUAUUUUAGAUAUUUAUACAUGUAUAGCUACCA
...((.(((((..(((((((((.((.((((..((((...((((.((((....(((....)))....)))))))).....))))..))))......))....)))))))))...))))))) ( -29.10)
>DroSec_CAF1 19797 120 - 1
CUUUGAGUAGCACACGUGUGUACUCGAUUAUGGAACCAGCAGCUGUUCUCGAAUUAGUUAAUGCUUGAAAGCUGGAACAGUUUUGUAAUAUUUUCGAUAUUUAUACAUGUAUAGCUACUU
....(((((((..(((((((((.((((..(((....(((.(((((((((.(....(((....)))......).))))))))))))...)))..))))....)))))))))...))))))) ( -35.00)
>DroSim_CAF1 20430 120 - 1
CUUUGAGUAGCACACGUGUAUACUCGAUUAUGGAACCGGCAGCUGUUCUCGAAUUAGUUAAUGCUUGAAAGCUGGAACAGUUUUGUAAUAUUUUUGAUAUUUAUAAAUGUAUAGCUACUU
....((((((((((..((((...((((..(((....(((.(((((((((.(....(((....)))......).))))))))))))...)))..))))....))))..)))...))))))) ( -26.40)
>consensus
CUUUGAGUAGCACACGUGUGUACUCGAUUAUGGAACCAGCAGCUGUUCUCGAAUUAGUUAAUGCUUGAAAGCUGGAACAGUUUUGUAAUAUUUUAGAUAUUUAUACAUGUAUAGCUACUU
......(((((..(((((((((.((((..(((....(((.(((((((((.(....(((....)))......).))))))))))))...)))..))))....)))))))))...))))).. (-28.64 = -28.53 +  -0.10)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:47 2006