| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 1,292,937 – 1,293,027 |
| Length | 90 |
| Max. P | 0.773667 |
| Location | 1,292,937 – 1,293,027 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 64.01 |
| Mean single sequence MFE | -38.75 |
| Consensus MFE | -10.67 |
| Energy contribution | -11.71 |
| Covariance contribution | 1.04 |
| Combinations/Pair | 1.59 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.28 |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.773667 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1292937 90 - 22224390 GGCAGCUCGC-CUAAAGCUUCAGCGUUGGCGUCU---UUGGGGGCAUCCUUGGUAGCUGAGGCAAG-GAUGGUAUCGAUU---------GCCAAUGGAGCUGCU ((((((((((-.....)).....((((((((...---(((..(.((((((((.(......).))))-)))).)..))).)---------))))))))))))))) ( -40.90) >DroSec_CAF1 25571 92 - 1 GGCAGCUCGCCCUAAAACCUCAGCGUUGGCGUCU---UUGGGGGCAUCUUUGGUGGCGGAGGCAAGGGAUGGUAUCGAUU---------GCCAAUGGAGCUGCU ((((((((((((((((.((((((((....)))..---.))))).....))))).)))...(((((..(((...)))..))---------)))....)))))))) ( -38.40) >DroEre_CAF1 27117 90 - 1 GGUAGCUCAC-CUAGAACCUCGGCAUUGGCGUCU---UUAAGGGCAUCCUUGGUGGUUGCGGCAAG-GAUGGCCUCGAUU---------GCCGAAGGAGCUGCU ((((((((.(-(.((...)).))..((((((...---(..(((.((((((((.((....)).))))-)))).)))..).)---------)))))..)))))))) ( -40.60) >DroWil_CAF1 73126 87 - 1 UGGGGCUCGG-CAAGAAC---G-----GGUAUCU---UGGUGGCCACUAUUGG-GACAAAGGCAAC-GUCCGCAGCGGCAAUAGAAGCUG---CUAAAGCUGGU ((((((.((.-(((((..---.-----....)))---)).))))).)))...(-(((...(....)-))))((((((((.......))))---))...)).... ( -28.10) >DroYak_CAF1 26176 90 - 1 GGCAGCUCAC-CUAAAACCUCGGCCUUGGCGUCU---UUGGGGACAUCCUUGGUGGCUGCGGCUAG-GAUGGCAUCGAUU---------GCCAGGGGAGUUGCU ((((((((.(-((....(((.((((...(((((.---(..(((....)))..).))).))))))))-).(((((.....)---------))))))))))))))) ( -42.00) >DroAna_CAF1 22293 93 - 1 GCCUGCUCCC-CUGUGACCUCCACCUGGGCGGCUGCCUGAGGCGCCUCUUUGGUGACGAGGCCCAG-GAUAGCAUCGAUG---------GCAGCCGGGGCCGUC ((((....((-(.(((.....)))..)))(((((((((((.((.((((((((....)))))...))-)...)).)))..)---------))))))))))).... ( -42.50) >consensus GGCAGCUCGC_CUAAAACCUCGGCCUUGGCGUCU___UUGGGGGCAUCCUUGGUGGCUGAGGCAAG_GAUGGCAUCGAUU_________GCCAAUGGAGCUGCU ((((((((......................((((...((((((....))))))......))))......((((................))))...)))))))) (-10.67 = -11.71 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:35 2006