Locus 4387

Sequence ID X_DroMel_CAF1
Location 11,552,709 – 11,552,802
Length 93
Max. P 0.926261
window7206

overview

Window 6

Location 11,552,709 – 11,552,802
Length 93
Sequences 3
Columns 93
Reading direction reverse
Mean pairwise identity 98.57
Mean single sequence MFE -32.07
Consensus MFE -32.25
Energy contribution -32.37
Covariance contribution 0.11
Combinations/Pair 1.03
Mean z-score -2.03
Structure conservation index 1.01
SVM decision value 1.17
SVM RNA-class probability 0.926261
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11552709 93 - 22224390
UACAUUCGGGCACCGAGUGCGGGCGAGAUAGAACGACAACUCCUGUUCCCGGUUCGUCGUCGUUCGUCAUUCCCAUAUUCGCUUCUCGUAUUC
......((((...((((((.(((...(((.(((((((.((.((.......))...)).))))))))))...))).))))))...))))..... ( -27.80)
>DroSec_CAF1 18922 93 - 1
UACAUUCGGGCAGCGAGUGCGGGCGAGAUAGAGCGACAACUCCUGUUCCCGGUUCGUCGUCGUUCGUCAUUCCCAUAUUCGCUUCUCGUAUUC
......((((.((((((((.(((...(((.(((((((.((.((.......))...)).))))))))))...))).)))))))).))))..... ( -34.20)
>DroSim_CAF1 19555 93 - 1
UACAUUCGGGCAGCGAGUGCGGGCGAGAUAGAGCGACAACUCCUGUUCCCGGUUCGUCGUCGUUCGUCAUUCCCAUAUUCGCUUCUCGUAUUC
......((((.((((((((.(((...(((.(((((((.((.((.......))...)).))))))))))...))).)))))))).))))..... ( -34.20)
>consensus
UACAUUCGGGCAGCGAGUGCGGGCGAGAUAGAGCGACAACUCCUGUUCCCGGUUCGUCGUCGUUCGUCAUUCCCAUAUUCGCUUCUCGUAUUC
......((((.((((((((.(((...(((.(((((((.((.((.......))...)).))))))))))...))).)))))))).))))..... (-32.25 = -32.37 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:44 2006