Locus 4381

Sequence ID X_DroMel_CAF1
Location 11,526,355 – 11,526,460
Length 105
Max. P 0.735916
window7194

overview

Window 4

Location 11,526,355 – 11,526,460
Length 105
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 81.72
Mean single sequence MFE -22.96
Consensus MFE -17.34
Energy contribution -18.98
Covariance contribution 1.64
Combinations/Pair 1.05
Mean z-score -1.71
Structure conservation index 0.76
SVM decision value 0.44
SVM RNA-class probability 0.735916
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11526355 105 - 22224390
AUUUAGCGGUCCAGAAAUCACCGAAUAU----AUAUCCGAAACUAAGUAGUUUCUCUGCUAGCCAUAA---AAAUUCAAGGUUAGACGAAAGCAUUGGACCAAUG----C-CUUGUU
.......(((((((..............----......((((((....))))))((..((((((....---........))))))..)).....)))))))....----.-...... ( -23.70)
>DroSec_CAF1 7616 109 - 1
AUUUAGCGGUCCAGAAAUCAUUGAAUAUACAUAUGUUCGAAACUAAGUAGUUUCUCUGCUAGCCAUAA---AAAUUCAAGGUUAGACGAAAGCAUUGGACCAAUA----C-CUUGUU
.......(((((((........((((((....))))))((((((....))))))((..((((((....---........))))))..)).....)))))))....----.-...... ( -26.70)
>DroSim_CAF1 8759 109 - 1
AUUUAGCGGUCCAGAAAUCAUUGAAUAUACAUAUAUUCGAAACUAAGUAGUUUCUCUGCUAGCCAUAA---AAAUUCAAGGUUAGACGAAAGCAUUGGACCAAUG----C-CUUGUU
.......(((((((........((((((....))))))((((((....))))))((..((((((....---........))))))..)).....)))))))....----.-...... ( -26.70)
>DroEre_CAF1 7451 104 - 1
AU-UAGCGGUCCACAAAUCACCGAAUAUACA----GCCGAAACUAAGUAGUUUCUCUGCUUGCCAUAA----AAUUCAAGGUUAGACGAAAGCAUUGGACCAAUG----CCUAUGUU
..-....((((((................((----(..((((((....)))))).)))((.(((....----.......))).)).(....)...))))))....----........ ( -19.70)
>DroYak_CAF1 8039 97 - 1
AUUUAGCGGUCCACAAAUCACCGAAUAU--------------------AGUUUCUUAGCUUGCCAUUAAACAAAUUCAAGGUUAGACGUAAGCAUUGGACCAAUUAUAAACCUUGUU
.......((((((.........(((...--------------------...)))...((((((..((((.(........).))))..))))))..))))))................ ( -18.00)
>consensus
AUUUAGCGGUCCAGAAAUCACCGAAUAUACA_AU_UCCGAAACUAAGUAGUUUCUCUGCUAGCCAUAA___AAAUUCAAGGUUAGACGAAAGCAUUGGACCAAUG____C_CUUGUU
.......((((((.........................((((((....))))))((..((((((...............))))))..))......))))))................ (-17.34 = -18.98 +   1.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:34 2006