| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 1,285,212 – 1,285,309 |
| Length | 97 |
| Max. P | 0.779510 |
| Location | 1,285,212 – 1,285,309 |
|---|---|
| Length | 97 |
| Sequences | 4 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 83.85 |
| Mean single sequence MFE | -24.12 |
| Consensus MFE | -19.33 |
| Energy contribution | -20.07 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.779510 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1285212 97 + 22224390 UAGUUCUCAAAAGCCGUCCUAUUUGAUC-AAAAUCCCGCAGUAUGAGAACUCACAGAUUGCGGCAAUGCUUUCGCCCAAGCAUUAAACAGUGACCUUC ...............(((((.(((((..-......(((((((.(((....)))...)))))))...(((((......)))))))))).)).))).... ( -20.10) >DroSim_CAF1 15416 96 + 1 UAGUUCUUAAAAGCCGCCCUAUUUGAUC-AAAAUCCCGCAGUCUGAGUACUCACAGAUUGCGGCAAUGGUUUCUUCCAAGCAUUAAACUGCGACCUU- ..............(((....(((((((-......((((((((((........))))))))))...(((......))).).))))))..))).....- ( -22.70) >DroEre_CAF1 19493 96 + 1 UAGUUCCCAAAAGCCGCCCUAUUUGAUACAAAGUCCCGCGGUCUGGAAACUCACAGAUUGCGGCAAUGCC-UCGCACAAGCAUUGAACUAUGACCUU- ((((((......(((.........(((.....)))..((((((((........)))))))))))(((((.-........))))))))))).......- ( -25.40) >DroYak_CAF1 18348 96 + 1 UAGUGCUCAAGAGCCGUCCCGCUUGAUG-AAAAUCCCGCAGUCUGAGCACUCACAGAUUGCGGCAAUGCUUUCGCACAGGCAUUAAACUAUAACCUU- (((((((....)))......(((((...-......((((((((((........))))))))))...(((....)))))))).....)))).......- ( -28.30) >consensus UAGUUCUCAAAAGCCGCCCUAUUUGAUC_AAAAUCCCGCAGUCUGAGAACUCACAGAUUGCGGCAAUGCUUUCGCACAAGCAUUAAACUAUGACCUU_ (((((.......(((.........(((.....)))..((((((((........)))))))))))(((((((......))))))).)))))........ (-19.33 = -20.07 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:34 2006