Locus 4379

Sequence ID X_DroMel_CAF1
Location 11,514,129 – 11,514,238
Length 109
Max. P 0.807404
window7190

overview

Window 0

Location 11,514,129 – 11,514,238
Length 109
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 78.48
Mean single sequence MFE -24.95
Consensus MFE -15.71
Energy contribution -16.78
Covariance contribution 1.06
Combinations/Pair 1.04
Mean z-score -1.93
Structure conservation index 0.63
SVM decision value 0.64
SVM RNA-class probability 0.807404
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11514129 109 - 22224390
-----------UCCUUUCGCUGUGAGUAACAUCGCAUGCCGAUUAAAUCAAGUGAAUAUGGAAACACGACUCUUUUCUCAUUGUGUGUUUAUGUUUAAACAUUAACUUCGGUGUUUUUCA
-----------.........(((((......))))).(((((..........((((((((((.((((((...........)))))).))))))))))..........)))))........ ( -22.95)
>DroSec_CAF1 12281 106 - 1
CCAA--ACACUUCUUUU------------CAUCGCAUGCCGAUUAAAUCAAGUGAAUAUGGAAACACGACUCUUUUCACUUUGUGUGUUUAUGUUUAAACAUUAACUUCGGUGUUUUGCA
....--...........------------....(((.(((((..........((((((((((.((((((...........)))))).))))))))))..........)))))....))). ( -21.85)
>DroEre_CAF1 35509 117 - 1
CUAA--AACC-UUCUUUCGCUGUUACUAAAAUCGCAUGCCGAUAAACGUAAGUGAAAAUGGAAACACGACUCUUUUGUCUUUGUGUGUUUUUGUUUAAACAUUUACUUCGGUGUUUUACA
.(((--(((.-.......((.(((.....))).))..(((((.....(((((((.(((..((((((((((......))).....)))))))..)))...))))))).))))))))))).. ( -27.20)
>DroYak_CAF1 35291 119 - 1
CUAAAAAACC-CUCCUUCUCUGUGAGUAAAAUCGCAUACCGACAAACGUAAGUGAAAAUGGAAACACGACUCUUUUGUCUCUGUGUGUUUUUGUUUAAACAUUUACUUCGGUGUUUAACA
..........-..........((((......))))(((((((.....(((((((.(((..((((((((((......))).....)))))))..)))...))))))).)))))))...... ( -27.80)
>consensus
CUAA__AACC_UCCUUUCGCUGUGAGUAAAAUCGCAUGCCGAUAAAAGCAAGUGAAAAUGGAAACACGACUCUUUUCUCUUUGUGUGUUUAUGUUUAAACAUUAACUUCGGUGUUUUACA
...................................(((((((..........((((((((((.((((((...........)))))).))))))))))..........)))))))...... (-15.71 = -16.78 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:30 2006