Locus 4377

Sequence ID X_DroMel_CAF1
Location 11,508,457 – 11,508,577
Length 120
Max. P 0.649733
window7186

overview

Window 6

Location 11,508,457 – 11,508,577
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 83.83
Mean single sequence MFE -49.92
Consensus MFE -34.07
Energy contribution -34.10
Covariance contribution 0.03
Combinations/Pair 1.35
Mean z-score -2.44
Structure conservation index 0.68
SVM decision value 0.24
SVM RNA-class probability 0.649733
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11508457 120 + 22224390
GGGACAAGGAGAAGCUGGCCAACGAUACGGAUCGCAAGGUGACGUUUACGGGUCUGGUGCCUGGUCGAUUGUACAACAUCACAGUUUGGACUGUGAGCGGUGGUGUGGCCAGUUUGCCCA
.......((..((((((((((.(((((((.(((....)))..)))...(((((.....)))))))))....(((.((.(((((((....)))))))...)).)))))))))))))..)). ( -46.20)
>DroVir_CAF1 22617 120 + 1
AGGAAAAGGAGAAGCUGGCCAACGAUACGGACCGCAAGGUGACCUUCACCGGCCUGAUACCGGGCCGCCUCUACAACAUAACCGUGUGGACGGUGAGCGGCGGCGUCGCCAGUUUGCCGA
.......((..((((((((..(((...((..((((..((((.....))))((((((....))))))(((((((((.(......))))))).)))..)))))).))).)))))))).)).. ( -51.50)
>DroGri_CAF1 4917 120 + 1
AGGACAAGGAGAAAUUGGCCAAUGAUACCGAUCGGAAGGUGACCUUCACCGGUUUGAUACCCGGUCGCCUUUACAACAUCACCGUGUGGACGGUGAGCGGGGGUGUGGCCAGUUUACCAA
.......((..((((((((((....((((.((((((.((((.....))))..)))))).((((.(((((((((((.(......))))))).))))).)))))))))))))))))).)).. ( -51.30)
>DroWil_CAF1 5171 120 + 1
AGGAUAAAGAGAAACUGGCCAAUGAUACCGAUCGCAAGGUGACCUUCACGGGUCUUGUGCCCGGUCGCCUAUACAACAUUACCGUCUGGACUGUAAGUGGCGGUGUGGCCAGUUUGCCCA
...........((((((((((....(((((.((((.((((((((.....((((.....))))))))))))........((((.((....)).)))))))))))))))))))))))..... ( -46.20)
>DroMoj_CAF1 19955 120 + 1
AGGAGAAGGAGAAGCUGGCCAACGAUACGGAUCGCAAGGUUACCUUCACCGGUCUGGUGCCGGGACGCCUCUACAACAUCACCGUCUGGACGGUGAGCGGAGGCGUUGCCAGUUUGCCGA
.......((..((((((((....((....((((....))))....)).(((((.....)))))(((((((((......(((((((....)))))))..))))))))))))))))).)).. ( -53.70)
>DroAna_CAF1 6086 120 + 1
GGGACAAGGAGAAGCUGGCCAACGACACCGACCGGAAGGUGACAUUCACGGGUCUAGUGCCCGGCCGGCUGUACAACAUUACGGUGUGGACGGUGAGCGGGGGAGUGGCCAGUCUGCCCA
(((...((.....((((((((..(((.((((((....)))(.....).)))))).....(((.((..(((((...((((....))))..)))))..)).)))...)))))))))).))). ( -50.60)
>consensus
AGGACAAGGAGAAGCUGGCCAACGAUACCGAUCGCAAGGUGACCUUCACCGGUCUGGUGCCCGGUCGCCUCUACAACAUCACCGUGUGGACGGUGAGCGGCGGUGUGGCCAGUUUGCCCA
.......((..((((((((((..((.....(((....))).....)).(((((.....)))))..((((....(....(((((((....)))))))...).)))))))))))))).)).. (-34.07 = -34.10 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:26 2006