| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 11,505,442 – 11,505,544 |
| Length | 102 |
| Max. P | 0.870846 |
| Location | 11,505,442 – 11,505,544 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 71.85 |
| Mean single sequence MFE | -30.62 |
| Consensus MFE | -13.01 |
| Energy contribution | -13.76 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.32 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.42 |
| SVM decision value | 0.87 |
| SVM RNA-class probability | 0.870846 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11505442 102 - 22224390 CCAGCAAAUGUUGCAUUUACAAAGUGACCACUGUUAUUUGCGAUUCGGUUGCUUUGCUGUGGCUGGACGAG-CACAUUGUGCGAUGGGCGGGAGAGGCGGGGA ((((((((((...))))).(((((..(((..(((.....)))....)))..))))).....)))))....(-(...((.(((.....))).))...))..... ( -27.90) >DroSec_CAF1 2868 90 - 1 CCAGCAAACGUUGCAUUUGCAAAGUGACCACUGUUAUUUGCGAUUCGGUUGCUUUGCUGUGGCUGGACAAGCCACAUUGUGCGAUGG-------------GAA ........((((((((..((((((..(((..(((.....)))....)))..))))))(((((((.....)))))))..)))))))).-------------... ( -36.00) >DroSim_CAF1 20546 90 - 1 CCAGCAAACGUUGCAUUUACAAAGUGACCACUGUUAUUUGCGAUUCGGUUGCUUUGCUGUGGCUGGACAAGCCACAUUGUGCGAUGG-------------GAA ........((((((((...(((((..(((..(((.....)))....)))..))))).(((((((.....)))))))..)))))))).-------------... ( -32.30) >DroEre_CAF1 27089 87 - 1 CCACCAAGCGUUGCACUUACAAAGUGACCACUGUUAUUUGUGAUUCGGUUGCUUUGCUGCGGCUGGACAAG-CGCUUUGUAAG--GG-------------GGA ((.((..((...)).(((((((((((..(((........))).(((((((((......)))))))))....-)))))))))))--))-------------)). ( -31.90) >DroYak_CAF1 26810 87 - 1 CCAGCAAGCGUUGCACUUACAAUGUGACCACUGUUAUUUGUGAUUCGGUCACUUUGCUGCGGCUGGACAAG-CACAUUGUGCA--GG-------------GGA (((((.(((((((......))))((((((...((((....))))..))))))...)))...)))))....(-(((...)))).--..-------------... ( -27.70) >DroAna_CAF1 3163 79 - 1 AGGACAUGCAUUCUUAUCACAAAGAGACCAGA----CCAGACCAGUGGCUGCCUUGUUGUGGCUGAGCAUG-CAUGUGGCAAG--G----------------- ...((((((((.((((((((((.(((..(((.----(((......)))))).))).)))))).)))).)))-)))))......--.----------------- ( -27.90) >consensus CCAGCAAACGUUGCAUUUACAAAGUGACCACUGUUAUUUGCGAUUCGGUUGCUUUGCUGUGGCUGGACAAG_CACAUUGUGCG__GG_____________GGA .........((((((....((((((((((.................)))))))))).))))))((.((((......)))).)).................... (-13.01 = -13.76 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:25 2006