Locus 4374

Sequence ID X_DroMel_CAF1
Location 11,504,067 – 11,504,163
Length 96
Max. P 0.943401
window7183

overview

Window 3

Location 11,504,067 – 11,504,163
Length 96
Sequences 3
Columns 99
Reading direction reverse
Mean pairwise identity 74.65
Mean single sequence MFE -14.03
Consensus MFE -11.30
Energy contribution -11.63
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.39
Structure conservation index 0.81
SVM decision value 1.33
SVM RNA-class probability 0.943401
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11504067 96 - 22224390
AACCGAAUACGAGUUGCAAGUGCCACAAACUGCUAAUUGCAGUUCGAUAUUUCACAUUACCCCCCCCCCC--CCU-GACUUCAAACAGCCCCCUCGACA
...(((...(((..(((((..((........))...)))))..)))........................--.((-(........))).....)))... ( -14.80)
>DroEre_CAF1 25771 80 - 1
AACCAAAUACGAGUUGCAAGUGCCACAAACUGCUAAUUGCAGUUCGAUAUUAGCCAUUAGCCCCUCAGAGCCC-------------------CUCGUCA
........(((((..((.(((.......)))((((((.(((((.....))).)).))))))........))..-------------------))))).. ( -15.60)
>DroYak_CAF1 25447 87 - 1
AACCAAAUACGUGUUGCAAGUGCCACAAACUGCUAAUUGCAGUUCGAUAUUACACAUUUCCCCUCCACAGCCCCCU------------CACCCUCGUCA
..........((((.((....))..(.((((((.....)))))).).....)))).....................------------........... ( -11.70)
>consensus
AACCAAAUACGAGUUGCAAGUGCCACAAACUGCUAAUUGCAGUUCGAUAUUACACAUUACCCCCCCACAGCCCC______________C_CCCUCGUCA
.....((((((((((((((..((........))...)))))))))).))))................................................ (-11.30 = -11.63 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:23 2006