Locus 4373

Sequence ID X_DroMel_CAF1
Location 11,503,441 – 11,503,554
Length 113
Max. P 0.899109
window7182

overview

Window 2

Location 11,503,441 – 11,503,554
Length 113
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 88.86
Mean single sequence MFE -16.24
Consensus MFE -12.70
Energy contribution -12.54
Covariance contribution -0.16
Combinations/Pair 1.18
Mean z-score -2.00
Structure conservation index 0.78
SVM decision value 1.01
SVM RNA-class probability 0.899109
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11503441 113 + 22224390
UCAAUAAUAACAUAACAGCAUUUUGCUCAUUAUUGUAAGCAGUGAAAACUACAAAUGAUACAAUCGUUUGUAGCGCUUUUCU----UCUUCC---UUACUUCCCCCAUAACUUAUUUCCC
................(((.....))).......(((((.((.((((((((((((((((...)))))))))))...))))).----.))..)---))))..................... ( -18.50)
>DroSec_CAF1 905 116 + 1
GCAAUAAUAACAUAACAGCCUUUUGCUCAUUAUUGUAAACAGUUAAAACUACAAAUGAUACAAUCGUUUGUAGCGCUUUUCUUUCCUCUUCU---UCCCUUCUCCGAUAACUU-UUCCCC
((..............(((..(((((........)))))..)))....(((((((((((...))))))))))).))................---..................-...... ( -16.20)
>DroSim_CAF1 18837 116 + 1
GCAAUAAUAACAUAACAGCAUUUUGCUCAUUAUUGUAAACAGUUAAAACUACAAAUGAUACAAUCGUUUGUAGCGCUUUUCUUUCCUCUUCU---UCCCUUCUCCCAUAACUU-UUCCCC
((.(((((((......(((.....)))..)))))))............(((((((((((...))))))))))).))................---..................-...... ( -15.60)
>DroEre_CAF1 25179 116 + 1
GCAAUAAUAACAUAACAGCAUUUUGCUCAUUAUUGCAGACGGUAAAAAGUACAAAUGAUACAACCGUUUGUAGCGCUUUUCUUUCCUCUUUC---UCCCUUCGUCCAUAACUU-UUCCCC
((((((((........(((.....))).))))))))(((.((..(((((((((((((.......)))))))...))))))....)))))...---..................-...... ( -18.00)
>DroYak_CAF1 24803 119 + 1
GCAAUAAUAACAUAACAGCAUUUUGCUCAUUAUCGUAGACAGUAAAAAGUACAAAUGAUACAACCGUUUGUAACGCUUUUCUUUCCUCUUUUUCUUCCCUGCUUCCAUAACUU-UUCCCC
(((.............(((.....))).......(..((.((..(((((((((((((.......)))))))...)))))))).))..)...........)))...........-...... ( -12.90)
>consensus
GCAAUAAUAACAUAACAGCAUUUUGCUCAUUAUUGUAAACAGUAAAAACUACAAAUGAUACAAUCGUUUGUAGCGCUUUUCUUUCCUCUUCU___UCCCUUCUCCCAUAACUU_UUCCCC
................(((..(((((........))))).........(((((((((.......))))))))).)))........................................... (-12.70 = -12.54 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:22 2006