Locus 4372

Sequence ID X_DroMel_CAF1
Location 11,499,279 – 11,499,380
Length 101
Max. P 0.929076
window7181

overview

Window 1

Location 11,499,279 – 11,499,380
Length 101
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 67.46
Mean single sequence MFE -26.15
Consensus MFE -11.92
Energy contribution -13.70
Covariance contribution 1.78
Combinations/Pair 1.04
Mean z-score -2.37
Structure conservation index 0.46
SVM decision value 1.20
SVM RNA-class probability 0.929076
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11499279 101 - 22224390
ACAUCACUGAAAUCAAUGG------------------AAACGUUAAUGAUGAUGAUGAUGACGGUAAGUUUGUUGAUUAUUAUUAACGCAUAGUGUGUCAGUCUGGUCACA-UUAUGCAA
.................(.------------------...)((((((((((((.(....(((.....)))...).))))))))))))((((((((((.(......).))))-)))))).. ( -29.50)
>DroSec_CAF1 33451 98 - 1
ACAUCACUGAAAUCAAUGG------------------CAGCGUUAAUGAUGAUGAUGA---UGGUAAGUUUGUUGAUUAUUAUUAACGCAUAGUGUGUCAGUCUGGUCACA-UUAUGCAA
....((.((....)).))(------------------(.((((((((((((((((..(---........)..)).))))))))))))))((((((((.(......).))))-)))))).. ( -28.00)
>DroAna_CAF1 43472 111 - 1
ACAGCCCUAAUUAUAAUGGCAUAAUGCUAUAAUGUUAUAAUGUUAAUGAUAAUGAUA---------AUGAUGCUGGCGAAUAUUAACCCAUAGUCGGACAGUUUGGUCACAAUUAUGCCA
................(((((((((.......((((((.......)))))).((((.---------....(((((((...............))))).)).....))))..))))))))) ( -20.96)
>consensus
ACAUCACUGAAAUCAAUGG__________________AAACGUUAAUGAUGAUGAUGA____GGUAAGUUUGUUGAUUAUUAUUAACGCAUAGUGUGUCAGUCUGGUCACA_UUAUGCAA
.........................................((((((((((((.(..................).))))))))))))((((((((((.(......).)))).)))))).. (-11.92 = -13.70 +   1.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:21 2006