Locus 4370

Sequence ID X_DroMel_CAF1
Location 11,490,768 – 11,490,865
Length 97
Max. P 0.920185
window7177

overview

Window 7

Location 11,490,768 – 11,490,865
Length 97
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 75.00
Mean single sequence MFE -23.90
Consensus MFE -15.72
Energy contribution -15.83
Covariance contribution 0.11
Combinations/Pair 1.05
Mean z-score -1.72
Structure conservation index 0.66
SVM decision value 1.13
SVM RNA-class probability 0.920185
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11490768 97 + 22224390
GUUGGCUAAACUAGGAAAAAA----------AAUGUG-GAAAAAUCGCGUUGAAAAAGA--------AAACUUUGCGACACUUUCAAGUGUCGACGGCG-GCUGG---UGGGCUCAUAAC
((.((((..(((((.......----------((((((-(.....)))))))........--------...(.((((((((((....))))))).))).)-.))))---).)))).))... ( -22.70)
>DroSec_CAF1 25603 97 + 1
GU-GGCCAAACUAGGAAA--A----------AAUGUG-GAAAAAUAGCGUUGAAAAAGA--------AAACUUUGCGACACUUUCAAGUGUCGACGGCG-GCUGGUGGUGGGCUCAUAAC
((-((((..(((((....--.----------..(((.-.....))).(((((..((((.--------...)))).(((((((....))))))).)))))-.)))))....))).)))... ( -26.30)
>DroAna_CAF1 34109 113 + 1
----GCCAAACUAGAAAAAAAAAAUACAGAAAAUAUGGGGAAAAUAGCGUUAAAAAAAAAAAAUAGGAAACUUUGCGACACUUUCAAGUGUCGGUGGAGGGCUGG---GUGGCUCGUAAC
----.............................((((((..(..((((.((.............((....))...(((((((....)))))))....)).)))).---.)..)))))).. ( -22.70)
>consensus
GU_GGCCAAACUAGGAAAAAA__________AAUGUG_GAAAAAUAGCGUUGAAAAAGA________AAACUUUGCGACACUUUCAAGUGUCGACGGCG_GCUGG___UGGGCUCAUAAC
....(((...((((.................(((((..........)))))........................(((((((....)))))))........)))).....)))....... (-15.72 = -15.83 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:18 2006