| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 11,466,066 – 11,466,173 |
| Length | 107 |
| Max. P | 0.507665 |
| Location | 11,466,066 – 11,466,173 |
|---|---|
| Length | 107 |
| Sequences | 4 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 71.99 |
| Mean single sequence MFE | -25.67 |
| Consensus MFE | -11.59 |
| Energy contribution | -12.65 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.45 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.507665 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11466066 107 - 22224390 -UAAAAUGCUUGAAAUUCGAUGGAGCUACUAUAAUGCGUCCAUAUGGAGUAAU-UUACUUGGCGCACAAGAAUC-UUAUGGAUUAUUUCGCAAGAUUUUCUUA-------AUGAAAA -......((((.(.......).))))........((((.(((..((((....)-)))..)))))))..((((((-((.((((....)))).))))))))....-------....... ( -21.60) >DroSec_CAF1 11344 96 - 1 -------------AAUUCGAUGGAGCUACUCUAAUGCGUCCAUAUGGAGUAAUUUUACUGGGCACGCAAGAAUC-UUAUGGAUUAUUUCGCAAGAUUUUCUUU-------GUGAAAA -------------((((((.(((((...))))).(((((((....(((....))).....)).)))))......-...)))))).(((((((((......)))-------)))))). ( -21.90) >DroEre_CAF1 11161 105 - 1 GUAA-AAGCAAAAGCUACAAUGCUGC-----UAAUGCGGCCAUAUGGAGUAAU-UUACUGGGCAUCCAGGAAUU-UUGUGGAUUGUUUCGCAAGAUUUUCUUUUAUAAACAAG---- ((((-(((.....(((.(((((((((-----....)))).))).)).)))...-...((((....))))(((((-(((((((....)))))))))))).))))))).......---- ( -27.80) >DroYak_CAF1 11275 111 - 1 AUAAAAAGGAAAAUCUCCAAUGGUGC-----UAAUGCGUCCAUAUGGAGUCAU-UUACUGGGCACCCAAGAAUUUUUGUGGAUUAUUUCGCAAGAUUUUCUUGUACAAAAAUGAAAA ..............((((((((((((-----....))).)))).)))))((((-((...((....))(((((.(((((((((....)))))))))..)))))......))))))... ( -31.40) >consensus _UAA_AAGCAAAAAAUUCAAUGGAGC_____UAAUGCGUCCAUAUGGAGUAAU_UUACUGGGCACCCAAGAAUC_UUAUGGAUUAUUUCGCAAGAUUUUCUUU_______AUGAAAA .............(((((((((((((.........)).))))).)))))).................(((((...(((((((....)))))))....)))))............... (-11.59 = -12.65 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:09 2006