Locus 4361

Sequence ID X_DroMel_CAF1
Location 11,461,644 – 11,461,761
Length 117
Max. P 0.697333
window7164

overview

Window 4

Location 11,461,644 – 11,461,761
Length 117
Sequences 4
Columns 119
Reading direction forward
Mean pairwise identity 93.08
Mean single sequence MFE -17.36
Consensus MFE -14.52
Energy contribution -14.77
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -1.71
Structure conservation index 0.84
SVM decision value 0.34
SVM RNA-class probability 0.697333
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11461644 117 + 22224390
AUGCAUUUAAUCAAAGUAAAGACUAAACUCGCGCUAAAAAUGCCCGAAUUCGAAAGAAACUAGCGAAAAGCCC-AAUUCAAAAAUCGCACAAUAAAU-UGCAAAGUCCAAAGCAACAAC
.(((((((.....))))...((((....((((((.......)).....(((....)))....)))).......-............(((........-)))..))))....)))..... ( -17.40)
>DroSec_CAF1 7033 117 + 1
AUGCAUUUAAUCAAAGUAAAGACUAAACUCGCGCUGAAAAUGCCCGAAUUCGAAAGAAACUAGCGAAAAGCGC-AAUUCAAAAAUCGCACAAUAAAU-UGCAACAUCCACAGCAACAAC
.(((..........................(((((.....(((.....(((....)))....)))...)))))-............(((........-)))..........)))..... ( -19.30)
>DroEre_CAF1 6819 119 + 1
AUGCAUUUAAUCAAAGUAAAGACUAAACUCGCGCUGAAAACGCCCGAAAUCGAAAGAAACUAGCGAAAAACCCCAUUUCGAAAAUCGCACAAUAAAUUUGCAAAGUCCACAGCAACAAC
.(((((((.....))))...((((....(((((((....).))......((....)).....))))....................(((.........)))..))))....)))..... ( -15.20)
>DroYak_CAF1 6736 117 + 1
AUGCAUUUAAUCAAAGUAAAGACUAAACUCGUGCUGAAAAUGCCCGAAUUCGAAAGAAACUAGCGAAAAAUCC-AAUUCAAAAAUCGCACAAUAAAU-UGCAAAGUCUACAGCAACAGC
.(((((((.....))))..(((((....(((.((.......)).))).(((....)))....((((.......-..........)))).........-.....)))))...)))..... ( -17.53)
>consensus
AUGCAUUUAAUCAAAGUAAAGACUAAACUCGCGCUGAAAAUGCCCGAAUUCGAAAGAAACUAGCGAAAAACCC_AAUUCAAAAAUCGCACAAUAAAU_UGCAAAGUCCACAGCAACAAC
.((((.........(((...........(((.((.......)).))).(((....)))))).((((..................))))..........))))................. (-14.52 = -14.77 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:05 2006