| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 11,459,322 – 11,459,440 |
| Length | 118 |
| Max. P | 0.802966 |
| Location | 11,459,322 – 11,459,440 |
|---|---|
| Length | 118 |
| Sequences | 3 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 79.31 |
| Mean single sequence MFE | -27.77 |
| Consensus MFE | -18.37 |
| Energy contribution | -18.60 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.802966 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11459322 118 - 22224390 ACUCACACAAAAUGUUAGUCCAAAUGGACAUCUGAGCCAUGGGCUUAGUGAGCCAAGGCGAUAGGCUGUAUAUGUGUACCCAGACAGCAUGCACAGCGAAAUGUUAACAAAGAAAACA ............(((((((((....))))..(((.(((...(((((...)))))..)))..)))(((((.(((((((......))).)))).))))).......)))))......... ( -32.60) >DroSec_CAF1 4830 96 - 1 ----------------AGUCUAAUUGGACUUCUUAGCU------CCAGUGAGCCAAGGCGAUAGGCUGUAUAUGCGCACCCAGACAGCAUGUACGACGAAAUGUUAACAAACAAAACA ----------------((((((((((((((....)).)------)))))..((....))..))))))((((((((...........)))))))).......((((....))))..... ( -24.80) >DroSim_CAF1 4239 112 - 1 ACUCACACAAAAUGUUAGUCCAAUUGGACUUCUUAGCU------CCAGUGAGCCAAGGGGAUAGGCUGUAUAUGCGCACCCAGACAGCAUGUACGACGAAAUGUUAACAAACAAAACA ............(((((((((....)))((((((.(((------(....)))).))))))....(.(((((((((...........))))))))).)......))))))......... ( -25.90) >consensus ACUCACACAAAAUGUUAGUCCAAUUGGACUUCUUAGCU______CCAGUGAGCCAAGGCGAUAGGCUGUAUAUGCGCACCCAGACAGCAUGUACGACGAAAUGUUAACAAACAAAACA .................((((....))))...(((((.............((((.........))))((((((((...........))))))))........)))))........... (-18.37 = -18.60 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:03 2006