| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 11,452,515 – 11,452,635 |
| Length | 120 |
| Max. P | 0.888501 |
| Location | 11,452,515 – 11,452,635 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 94.75 |
| Mean single sequence MFE | -32.84 |
| Consensus MFE | -28.88 |
| Energy contribution | -28.96 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.88 |
| SVM decision value | 0.95 |
| SVM RNA-class probability | 0.888501 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11452515 120 - 22224390 CUUUCUGUAGUCAUCGAACUCUCCAACAAUCUCGUUGAUCGUCUGAUCCUCAAUUACGUAGAGAGUGCAACCUGUUUCACGGAUCAAACGCUCGUCGUGGGAGACGAUGAUCACGCCACC ......((.(((((((...(((((........((.(((.(((.((((((.......(.....).(((.((....)).))))))))).))).))).))..)))))))))))).))...... ( -32.00) >DroSec_CAF1 6446 120 - 1 CUUUCUGUAGUCAUCGAACUCUCCAACAAUCUCGUUGAUCGUCUGAUCCUCAAUCACGUAGAGAGUGCAACCUGUUUCACGGAUCAAACGCUCGUCGUGGGAGACGAUGAUCACGCCACC ......((.(((((((...(((((........((.(((.(((.((((((....((.....))..(((.((....)).))))))))).))).))).))..)))))))))))).))...... ( -32.70) >DroSim_CAF1 5860 120 - 1 CUUUCUGUAGUCAUCGAACUCUCCAACAAUCUCGUUGAUCGUCUGAUCCUCAAUCACGUAGAGUGUGCAACCUGUUUCACGGAUCAAACGCUCGUCGUGGGAGACGAUGAUCACGCCACC ......((.(((((((...(((((.........(..((((....))))..)...((((..((((((.....(((.....))).....))))))..)))))))))))))))).))...... ( -36.30) >DroEre_CAF1 9805 120 - 1 UUUCCUGUAGUCGUCAAACUCUCCAACAAUCUCAUUGAUCGUUUGAUCCUCAAUCACGUAGAGAGUGCAACCUGUUUCACGGAUCAAACGCUCGUCGUGGGAGACGAUGAUCACUCCACC ......((.((((((....(((((.((.(((.....)))((((((((((....((.....))..(((.((....)).)))))))))))))......)).))))).)))))).))...... ( -31.10) >DroYak_CAF1 9977 120 - 1 UUUCCUGUAGUCGUCGAACUCUCCAACAAUCUCAUUGAUCGUUUGGUCCUCAAUAACGUAGAGGGUGCAACCUGUUUCACGAAUCAAACGCUCGUCGUGGGAGACGAUGAUCACACCACC .....(((.(((((((...(((((.((.(((.....)))((((((((((((.........))))(((.((....)).)))..))))))))......)).)))))))))))).)))..... ( -32.10) >consensus CUUUCUGUAGUCAUCGAACUCUCCAACAAUCUCGUUGAUCGUCUGAUCCUCAAUCACGUAGAGAGUGCAACCUGUUUCACGGAUCAAACGCUCGUCGUGGGAGACGAUGAUCACGCCACC ......((.(((((((...(((((............((((....))))......((((..(((.((.....(((.....))).....)).)))..)))))))))))))))).))...... (-28.88 = -28.96 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:52 2006