| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 1,264,505 – 1,264,599 |
| Length | 94 |
| Max. P | 0.531796 |
| Location | 1,264,505 – 1,264,599 |
|---|---|
| Length | 94 |
| Sequences | 3 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 94.33 |
| Mean single sequence MFE | -19.36 |
| Consensus MFE | -18.30 |
| Energy contribution | -18.97 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.95 |
| SVM decision value | -0.00 |
| SVM RNA-class probability | 0.531796 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1264505 94 + 22224390 AUUUCAAUAUUUUUGGCAUGCCUCCGCAUUUCCCCCGCGGAGUUUCCCGCUCCGCUUUCCCUACUUGUGUGUCGUGUCGCUAACUUUUUAAAAG ............(((((((((..(((((........(((((((.....)))))))..........)))).)..)))).)))))........... ( -21.57) >DroSec_CAF1 18592 94 + 1 AUUUCAAUAUUUUUGGCAUGCCUCCGCAUUUCCCCCGCGGAGUUUCCCGCUCCGCUUUCCCCACUUGUGUGUCGUGUCGCUAACUUUUUAAAAG ............(((((((((..(((((........(((((((.....)))))))..........)))).)..)))).)))))........... ( -21.57) >DroEre_CAF1 20187 91 + 1 AUUUCAAUAUUUUUGGCCUGCCUCCGCAUUUCCC---CGGAGUUUUCCGCUCCGCCUUCCCCACUUGUGUGUCGUGUCGCUAACUUUUCAAAAG ............(((((..(((..(((((.....---((((((.....))))))............)))))..).)).)))))........... ( -14.93) >consensus AUUUCAAUAUUUUUGGCAUGCCUCCGCAUUUCCCCCGCGGAGUUUCCCGCUCCGCUUUCCCCACUUGUGUGUCGUGUCGCUAACUUUUUAAAAG ............(((((((((..(((((........(((((((.....)))))))..........)))).)..)))).)))))........... (-18.30 = -18.97 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:30 2006