Locus 4347

Sequence ID X_DroMel_CAF1
Location 11,443,835 – 11,443,943
Length 108
Max. P 0.533186
window7142

overview

Window 2

Location 11,443,835 – 11,443,943
Length 108
Sequences 3
Columns 108
Reading direction reverse
Mean pairwise identity 94.38
Mean single sequence MFE -28.28
Consensus MFE -25.95
Energy contribution -25.51
Covariance contribution -0.44
Combinations/Pair 1.06
Mean z-score -1.62
Structure conservation index 0.92
SVM decision value -0.00
SVM RNA-class probability 0.533186
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11443835 108 - 22224390
UCUUGAAAAAAAAAAAAUGUCAACGAAAUGUGUAAUACAAAUGCAGCUCUGAGUUUUGUUCUCCGUCGACAUUUCGUUGCGCCGCGUCGCGUCAUGUGGAUCGAGAAU
((((((............(.((((((((((((....(((((..((....))...))))).......).)))))))))))).((((((......)))))).)))))).. ( -27.90)
>DroSec_CAF1 958 103 - 1
UCUUGAAAA---AAAAAUGUCGACGAAAUGUAUAAUACAAAUGCAGC--UGAGUUUUGUUCUCCGUUGACAUUUCGUUGCGUCGCGUCGCGUCAUGUGGAUCGAGAAU
((((((...---....(((.(((((..(((((....(((((((((((--.(((.......))).)))).))))).)))))))..))))))))........)))))).. ( -28.26)
>DroSim_CAF1 5876 104 - 1
UCUUGAAAAA--AAAAAUGUCGACGAAAUGUAUAAUACAAAUGCAGC--UGAGUUUUGUUCUCCGUUGACAUUUCGUUGCGUCGCGUCGCGUCAUGUGGAUCGAGAAU
((((((....--....(((.(((((..(((((....(((((((((((--.(((.......))).)))).))))).)))))))..))))))))........)))))).. ( -28.69)
>consensus
UCUUGAAAAA__AAAAAUGUCGACGAAAUGUAUAAUACAAAUGCAGC__UGAGUUUUGUUCUCCGUUGACAUUUCGUUGCGUCGCGUCGCGUCAUGUGGAUCGAGAAU
((((((...........((.(((((((((((.....(((((..((....))...))))).........)))))))))))))((((((......)))))).)))))).. (-25.95 = -25.51 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:44 2006