Locus 4345

Sequence ID X_DroMel_CAF1
Location 11,439,713 – 11,439,821
Length 108
Max. P 0.594661
window7139

overview

Window 9

Location 11,439,713 – 11,439,821
Length 108
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 84.75
Mean single sequence MFE -26.53
Consensus MFE -19.66
Energy contribution -20.10
Covariance contribution 0.44
Combinations/Pair 1.14
Mean z-score -1.53
Structure conservation index 0.74
SVM decision value 0.12
SVM RNA-class probability 0.594661
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11439713 108 + 22224390
GGCUGGAAAUCUUAUCUGAAUUCCCUCGCUACAAACAUUCAAGUGG------------CCAAAAUACUCUGCUUGGGUUUUCCGAGCGUUGAUUCAAUAAUCUAGCCAUGAUAUAACAAC
(((((((....((((.((((((..(..(((((..........))))------------)...........((((((.....)))))))..)))))))))))))))))............. ( -29.50)
>DroSec_CAF1 9423 108 + 1
GGCUGGCAAUCUUAUCUGAAUUCCCUCGCUCCAAACAUUCAAGUGG------------CCAAAAUACUCUGUUUGGGUUUCCCGAGCGUUGAUUCAAUAAUCUAGCCAUGAUAUAACAAC
((((((.....((((.((((((....(((((((((((....((((.------------......)))).))))))((....)))))))..)))))))))).))))))............. ( -26.70)
>DroEre_CAF1 7273 120 + 1
GGUUGGCAAUCUUAUCUAAAUUCACUUGCUCCAAACAUUCAAGUGGAAAACAGGAGGGCAAAAAUAUUCUGUUUGGGUUCCUCGAGCGUUUAUUCAAUAAUCUAGCCAUGAUAUAAGAAC
((((((..............((((((((...........))))))))......((((((..((((.....))))..).)))))..................))))))............. ( -21.60)
>DroYak_CAF1 5992 120 + 1
GGUUGGCAAUCUUAUCUAAAUUCACUCGCUCCAAACAUUCAAGUGGCCAAAAGGAGGGCCAAAUUACUCUGUUUGAGUUUCUGGAGCGUUUAUUCAAUAAUCUAGCCAUGAUAUAAGAAC
((((((.....((((...(((.....(((((((..........(((((........)))))....((((.....))))...)))))))...)))..)))).))))))............. ( -28.30)
>consensus
GGCUGGCAAUCUUAUCUAAAUUCACUCGCUCCAAACAUUCAAGUGG____________CCAAAAUACUCUGUUUGGGUUUCCCGAGCGUUGAUUCAAUAAUCUAGCCAUGAUAUAACAAC
((((((.....((((.((((((....(((((.....(((((((..(......................)..))))))).....)))))..)))))))))).))))))............. (-19.66 = -20.10 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:41 2006