Locus 4343

Sequence ID X_DroMel_CAF1
Location 11,417,489 – 11,417,586
Length 97
Max. P 0.559211
window7134

overview

Window 4

Location 11,417,489 – 11,417,586
Length 97
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 89.48
Mean single sequence MFE -29.64
Consensus MFE -25.56
Energy contribution -25.12
Covariance contribution -0.44
Combinations/Pair 1.26
Mean z-score -1.30
Structure conservation index 0.86
SVM decision value 0.05
SVM RNA-class probability 0.559211
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11417489 97 + 22224390
CCUUGAGAUCGAUGUCGGAGAGAUCACCGCUCGAUAGAUCGACGGCACUCGUGUUGCCCACGUAUUCCAGUACGUCACUGCGGCGUACGAAUUUCAU
...((((((((((((((.((.((((...........))))((((((((....).))))...((((....))))))).)).)))))).)).)))))). ( -30.00)
>DroSec_CAF1 1371 97 + 1
CCUUAAGAUCGAUGUCGGAGAGAUCACCGCUCGAUAGAUCGACGGCACUCAUGUUGCCCACAUCUUCCAGUACGUCACUGCGGCGUACGGAUUUCAU
..........(((((.((.(((....(((.((((....)))))))..)))......)).))))).(((.(((((((.....))))))))))...... ( -28.00)
>DroSim_CAF1 1509 97 + 1
CCUUAAGAUCGAUGUCGGAGAGAUCACCGCUCGAUAGAUCGACGGCACUCAUGUUGCCCACAUCUUCCAGUACGUCACUGCGGCGUACGGAUUUCAU
..........(((((.((.(((....(((.((((....)))))))..)))......)).))))).(((.(((((((.....))))))))))...... ( -28.00)
>DroEre_CAF1 1368 97 + 1
CCUUGAGAUCAAUGUCGGAAAGAUCACCGUGCGACAGAUCGCCGACACUUAUGCAGCCCACGUUUUCCAGUACGUCACUACGGCGUACGGAUUUCAU
...(((((((..((((((...((((...........)))).))))))......................(((((((.....))))))).))))))). ( -30.20)
>DroYak_CAF1 1385 97 + 1
CCUUGAGAUCGAUGUCGGAGAGAUCACCGCACGACAGAUCGUGGGCACUCAUAUUGCUCACGUUUUUCAGUACGUCACUACGGCGUACGGAUUUUAU
...(((((((...(((((.(....).))).))((.(((.((((((((.......))))))))))).)).(((((((.....))))))).))))))). ( -32.00)
>consensus
CCUUGAGAUCGAUGUCGGAGAGAUCACCGCUCGAUAGAUCGACGGCACUCAUGUUGCCCACGUCUUCCAGUACGUCACUGCGGCGUACGGAUUUCAU
...((((((((((((.((.(((....(((.((((....)))))))..)))......)).))))).....(((((((.....))))))).))))))). (-25.56 = -25.12 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:36 2006