Locus 4342

Sequence ID X_DroMel_CAF1
Location 11,415,987 – 11,416,077
Length 90
Max. P 0.885030
window7133

overview

Window 3

Location 11,415,987 – 11,416,077
Length 90
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 75.91
Mean single sequence MFE -21.51
Consensus MFE -14.36
Energy contribution -13.68
Covariance contribution -0.68
Combinations/Pair 1.20
Mean z-score -1.75
Structure conservation index 0.67
SVM decision value 0.93
SVM RNA-class probability 0.885030
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11415987 90 + 22224390
AUCCAGGGUAGGUGGUUCUCCAAACAC---------------AUACAGACACACGCAUAUA-UAUCAGCCAGCAACUGACUGAAGUACAACUCCAUUUCAUCCUCC--
....(((((((((((.(((........---------------....)))..........((-(.((((.(((...))).)))).))).....)))))).)))))..-- ( -13.80)
>DroSec_CAF1 61 86 + 1
AUCCAGGGUGGGUGGUUCUCCAAACAC---------------ACAC----ACAUAUGUGUA-UAUCAGCCAGCGACUGACUGGAGGACAACUCCAUUUCAUCCUCA--
....((((((((..((((((((...((---------------(((.----.....))))).-..((((.......)))).))))))))....))....))))))..-- ( -25.40)
>DroSim_CAF1 199 86 + 1
AUCCAGGGUGGGUGGUUCUCCAAACAC---------------ACAC----ACAUAUGUGUA-UAUCAGCCAGCGACUGACUGGAGGACAACUCCAUUUCAUCCUCA--
....((((((((..((((((((...((---------------(((.----.....))))).-..((((.......)))).))))))))....))....))))))..-- ( -25.40)
>DroEre_CAF1 61 92 + 1
AUCCAGGGUGGGUGGUUAUCCAAACCCGUC------------AUAC----AUACGCACACAUUAUCAGCCAGAACCUGACUGGAGUACACCUCCACUUCAUCCUCCAC
....(((((((((((.........((.(((------------(...----....((...........)).......)))).)).........)))).))))))).... ( -19.61)
>DroYak_CAF1 61 103 + 1
AUCCAGGGUGGGUGAUUGUCCAAACCCGUCAGGCAGUUACACAUAC----AAACACACACA-UAUUAGACAGAACCUGACUGGAGUACACCUUCACUUCAUCCUCCAC
....(((((((((((..((.....((.((((((..(((........----...........-.....)))....)))))).)).....))..)))).))))))).... ( -23.36)
>consensus
AUCCAGGGUGGGUGGUUCUCCAAACAC_______________AUAC____ACACACAUAUA_UAUCAGCCAGCAACUGACUGGAGUACAACUCCAUUUCAUCCUCC__
....(((((((((((.................................................((((.(((...))).))))((.....)))))).))))))).... (-14.36 = -13.68 +  -0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:35 2006