Locus 4341

Sequence ID X_DroMel_CAF1
Location 11,412,430 – 11,412,550
Length 120
Max. P 0.569051
window7132

overview

Window 2

Location 11,412,430 – 11,412,550
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 88.11
Mean single sequence MFE -34.72
Consensus MFE -28.26
Energy contribution -27.60
Covariance contribution -0.66
Combinations/Pair 1.33
Mean z-score -1.89
Structure conservation index 0.81
SVM decision value 0.07
SVM RNA-class probability 0.569051
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11412430 120 - 22224390
UCGGUAUUGGUGACACUAUUGCCGAUCCCCAGACCUACAACGAGAUCCAGCAGGCCAUCAAGAAGGCAAAGGACGACGUGAUAAACGUUAUCCAAAAGGCCCACAACAUGGAGCUGGAGC
((((((.(((.....))).))))))....................((((((...((((......(((...(((..((((.....))))..))).....)))......)))).)))))).. ( -38.40)
>DroVir_CAF1 3655 120 - 1
UUGGCAUUGGCGACACUAUUGCCGAUCCGCAGACAUACAACGAAAUCCAGAUGGCCAUCAAGAAGGCCAAGGACGAUGUCAUCAAUGUUAUCCAGAAGGCGCACAACAUGGAACUCGAAC
..((.((((((((.....))))))))))............(((..((((..(((((........))))).(((..((((.....))))..)))...............))))..)))... ( -32.50)
>DroPse_CAF1 9226 120 - 1
UCGGCAUUGGCGACACCAUUGCCGAUCCGCAGACCUACAAUGAAAUUCAGAUGGCCAUCAAGAAGGCCAAGGACGAUGUCAUCAAUGUUAUCCAGAAGGCUCACAACAUGGAACUGGAAC
((((((.(((.....))).))))))((((....((.....(((..(((...(((((........))))).(((..((((.....))))..))).)))...)))......))...)))).. ( -34.00)
>DroWil_CAF1 3679 120 - 1
UUGGUAUUGGUGAUACCAUUGCUGAUCCUCAGACAUAUAACGAGAUCCAAAUGGCCAUCAAGAAGGCCAAAGACGAUGUCAUAAACGUUAUCCAAAAGGCCCAUAAUAUGGAACUGGAUC
..((((.(((.....))).))))(((((........((((((.........(((((........)))))..(((...))).....)))))).....((..((((...))))..))))))) ( -30.10)
>DroMoj_CAF1 3719 120 - 1
UUGGCAUCGGCGACACCAUUGCCGAUCCGCAGACCUACAACGAGAUCCAAAUGGCCAUCAAGAAGGCCAAGGACGAUGUCAUCAACGUCAUUCAAAAGGCCCACAACAUGGAGCUGGAGC
..((.((((((((.....)))))))))).................(((...(((((........)))))..((((.((....)).))))........((((((.....))).)))))).. ( -36.00)
>DroPer_CAF1 9242 120 - 1
UCGGCAUUGGCGACACCAUUGCCGAUCCGCAGACCUACAACGAAAUUCAGAUGGCCAUCAAGAAGGCCAAGGAUGAUGUCAUCAAUGUUAUCCAGAAGGCCCACAACAUGGAACUGGAAC
((((((.(((.....))).))))))(((.....(((.(.............(((((........))))).(((((((((.....))))))))).).))).(((.....)))....))).. ( -37.30)
>consensus
UCGGCAUUGGCGACACCAUUGCCGAUCCGCAGACCUACAACGAAAUCCAGAUGGCCAUCAAGAAGGCCAAGGACGAUGUCAUCAACGUUAUCCAAAAGGCCCACAACAUGGAACUGGAAC
((((((.(((.....))).))))))....................(((((....((((......((((..(((.(((((.....))))).)))....))))......))))..))))).. (-28.26 = -27.60 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:35 2006