Locus 4337

Sequence ID X_DroMel_CAF1
Location 11,407,609 – 11,407,703
Length 94
Max. P 0.811513
window7124

overview

Window 4

Location 11,407,609 – 11,407,703
Length 94
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 80.24
Mean single sequence MFE -31.00
Consensus MFE -21.15
Energy contribution -21.90
Covariance contribution 0.75
Combinations/Pair 1.12
Mean z-score -1.78
Structure conservation index 0.68
SVM decision value 0.65
SVM RNA-class probability 0.811513
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11407609 94 - 22224390
UAGCGGAGAAUAUCGAUU---UGCAACUUACCCACAAAGUUGCCGAUAAAGGCU-AUGCCCGUGCCAAUGGCAUUGUAUCCAUAGGUGUGGGCACCGC
..((((....(((((...---.(((((((.......))))))))))))......-.((((((..((.((((........)))).))..)))))))))) ( -37.60)
>DroPse_CAF1 636 97 - 1
AGCCGGAGAAUAUGUAAUAUAGCUAGCUCACCCCCGUAGUUGCCGAUGAAGGCA-AUGCCCGUGCCAUUGGCGUUGUAGCCGUAAGUGUGGGCGCCGC
...(((................................((((((......))))-))(((((..(...((((......))))...)..))))).))). ( -31.00)
>DroSec_CAF1 627 95 - 1
NNNNNAAGAAUAUCUAUU---UGCAACUUACCCACAAAGUUGCCGAUAAAGGCUAAUGCCCGUGCCAAUGGCAUUGUAUCCAUAGGUGUGGGCACCGC
..............((((---.(((((((.......))))))).))))..((....((((((..((.((((........)))).))..)))))))).. ( -30.90)
>DroEre_CAF1 492 94 - 1
UAGAGGAGAAUACCAACU---UGUUACUUACCCACAAAGUUGCCGAUAAAGGCU-AUGCCCGUGCCAUUGCCAUUGUAUCCGUAGGUGUGGGCUCCGC
....((((((((......---)))).....((((((...((((.((((..(((.-(((.......))).)))....)))).)))).)))))))))).. ( -25.50)
>DroYak_CAF1 1605 94 - 1
UAGAGGAUAAUAUGAACU---AACAACUUACCCACAAAGUUGCCGAUAAAGGCU-AUGCCCGUGCCAUUGGCAUUGUAUCCAUAGGUGUGGGCUCCUC
..(((((...........---...(((((.......)))))(((......))).-..(((((..((..(((........)))..))..)))))))))) ( -29.30)
>DroPer_CAF1 416 97 - 1
AGCCGGAGUAUAUGUAAUAUAGCUAGCUCACCCCCGUAGUUGCCGAUGAAGGCA-AUGCCCGUGCCAUUGGCGUUGUAGCCGUAAGUGUGGGCGCCGC
.((..((((....((......))..)))).........((((((......))))-))(((((..(...((((......))))...)..)))))))... ( -31.70)
>consensus
UAGCGGAGAAUAUCUAAU___UGCAACUUACCCACAAAGUUGCCGAUAAAGGCU_AUGCCCGUGCCAUUGGCAUUGUAUCCAUAGGUGUGGGCACCGC
...(((...................................(((......)))....(((((..((..(((........)))..))..))))).))). (-21.15 = -21.90 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:27 2006