Locus 4336

Sequence ID X_DroMel_CAF1
Location 11,406,785 – 11,406,887
Length 102
Max. P 0.938532
window7123

overview

Window 3

Location 11,406,785 – 11,406,887
Length 102
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 71.39
Mean single sequence MFE -21.87
Consensus MFE -15.08
Energy contribution -14.53
Covariance contribution -0.55
Combinations/Pair 1.18
Mean z-score -1.44
Structure conservation index 0.69
SVM decision value 1.27
SVM RNA-class probability 0.938532
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11406785 102 - 22224390
UGCUUCCCUAGAAGCAGUAAG-AUUUGUGAUAUGU-----ACACACGAAUACUAACAGUUAA------------ACUAAAUUAAUGAUUAGCUGAAAGUCUCGCGAGAAGUUCACUGAUA
((((((....))))))((.((-(((((((......-----...))))))).)).))......------------............(((((.((((..(((....)))..))))))))). ( -23.10)
>DroSim_CAF1 796 119 - 1
UGCUUCCCCAGAAGCAGUAAA-AUAUGUGAUAUGUACUGUACACACAAAUACUAACUAUUAACUAACUAAUAAGUCUAAUCCAAUGAUUAGCUGAAAGUCUCGCGAGAAGUUCGCUGAUA
.(((((....)))))((((..-...((((.(((.....)))))))....))))...(((((......)))))..............((((((.(((..(((....)))..))))))))). ( -21.60)
>DroYak_CAF1 725 107 - 1
UGCUCCUACAGAGGCAAUAAACAAAUGUGAAAUGCAC-AUACAUAGAAAUACUGGGAAUCAA------------UCUAAUCCACAGAUUAGCUGAAAGUCUCUAGAGACGUUUACUGAUA
(((..(....)..)))........(((((.....)))-))...........((((((.....------------.....))).)))(((((.((((.((((....)))).))))))))). ( -20.90)
>consensus
UGCUUCCCCAGAAGCAGUAAA_AUAUGUGAUAUGUAC__UACACACAAAUACUAACAAUUAA____________UCUAAUCCAAUGAUUAGCUGAAAGUCUCGCGAGAAGUUCACUGAUA
((((((....)))))).........((((............)))).........................................(((((.((((..(((....)))..))))))))). (-15.08 = -14.53 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:26 2006