Locus 4333

Sequence ID X_DroMel_CAF1
Location 11,402,891 – 11,403,011
Length 120
Max. P 0.764427
window7116

overview

Window 6

Location 11,402,891 – 11,403,011
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 91.81
Mean single sequence MFE -31.93
Consensus MFE -25.97
Energy contribution -27.21
Covariance contribution 1.25
Combinations/Pair 1.03
Mean z-score -1.82
Structure conservation index 0.81
SVM decision value 0.51
SVM RNA-class probability 0.764427
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11402891 120 + 22224390
AAAAUCGGUGGCGCAUUAGACGAGUUCAAAAACGAUGACGCCACCGGUGACGCAAUAGUUUACACACAAUGUGAAUGAUGCUCAUCGAAAUUCACAAAAGUGGUAGAGGCACAUACAUAC
...((((((((((((((................)))).))))))))))...((.....(((((.(((..((((((((((....)))...)))))))...)))))))).)).......... ( -34.09)
>DroSec_CAF1 4236 120 + 1
AAAAUCGGUGGCGCAUUAGACGAGUCCAAAAACGAUGACGCCACCGGUGACGCAAUAGUUUACACACAAUGUGAAUGAUGCUCAUAGAAAUUCACAAAAGUGGUAGAGGCACAUAUGUAC
...((((((((((((((................)))).))))))))))...((.....(((((.(((..(((((((.............)))))))...)))))))).)).......... ( -33.31)
>DroEre_CAF1 2729 120 + 1
AAAAUCGGCGGCGCAUUAGUCAAGUCCAAAAACGAUGACGCCACCGGUGACGCAAUAGUUUACAGGCAAUGUGGAUGAUGCUCAUCGAAAUUCAAAAAAGUGGUAGAGGCACGUACAUAC
.......(((((......((((.((......))..))))(((((((((((.(((...(((((((.....)))))))..)))))))))............)))))....)).)))...... ( -29.80)
>DroYak_CAF1 1649 120 + 1
AAAAUCGGCGGCGCAUUAGUCAGGUCCAAAAACGAUGACGCCACCGGUGACGCAAUAGUUUACAGACAAUUUUGAUGAUGCUCAUCGAAAUUCACAAAGGUGGUAGAGGUCCAUACAUAC
.........(((......))).((.((......(....)((((((.((((.......(((....))).(((((((((.....)))))))))))))...))))))...)).))........ ( -30.50)
>consensus
AAAAUCGGCGGCGCAUUAGACAAGUCCAAAAACGAUGACGCCACCGGUGACGCAAUAGUUUACACACAAUGUGAAUGAUGCUCAUCGAAAUUCACAAAAGUGGUAGAGGCACAUACAUAC
....(((((((((((((................)))).)))))))(((((.(((...(((((((.....)))))))..))))))))))...((((....))))................. (-25.97 = -27.21 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:20 2006