| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 11,401,950 – 11,402,094 |
| Length | 144 |
| Max. P | 0.967547 |
| Location | 11,401,950 – 11,402,055 |
|---|---|
| Length | 105 |
| Sequences | 3 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 96.83 |
| Mean single sequence MFE | -14.90 |
| Consensus MFE | -13.95 |
| Energy contribution | -13.73 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.94 |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.716570 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11401950 105 - 22224390 UUGAAAAUUGUUUUAAAAUUAGACAAAAAGCAAAAAUCCAAAACAAAAACAGCAACAAAUGGAUGGCCAAAAAUACACAAACAUUGUAUGGAUACAUUGCAGAUC .......((((((.......))))))...((((..((((....................(((....)))...(((((.......)))))))))...))))..... ( -14.30) >DroSec_CAF1 3383 105 - 1 UUGAAAAUUGUUUUAAAAUUAGACAAACAGCAAAAAUCCAAAACAAAAACAGCAACAAAUGGAUGGCCAAAAAUACACAAACAUUGUAUGGAUACAGUGCAGAUC .......((((((.......))))))...(((...((((....................(((....)))...(((((.......)))))))))....)))..... ( -14.10) >DroEre_CAF1 1790 105 - 1 UUGAAAAUUGUUUUAAAUUUAGACAAAAAGCAAAAAUCCAUAACAAAAACAGCAACAAAUGGAUGGCCAAAAAUACACAAACAUUGUGUGGAUACAGUGCAGAUC .......((((((.......))))))...(((...((((....................(((....))).....(((((.....)))))))))....)))..... ( -16.30) >consensus UUGAAAAUUGUUUUAAAAUUAGACAAAAAGCAAAAAUCCAAAACAAAAACAGCAACAAAUGGAUGGCCAAAAAUACACAAACAUUGUAUGGAUACAGUGCAGAUC .......((((((.......))))))...(((...((((....................(((....)))...(((((.......)))))))))....)))..... (-13.95 = -13.73 + -0.22)
| Location | 11,401,983 – 11,402,094 |
|---|---|
| Length | 111 |
| Sequences | 3 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 97.00 |
| Mean single sequence MFE | -25.90 |
| Consensus MFE | -23.49 |
| Energy contribution | -23.93 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.91 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.621072 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11401983 111 + 22224390 UUUUGGCCAUCCAUUUGUUGCUGUUUUUGUUUUGGAUUUUUGCUUUUUGUCUAAUUUUAAAACAAUUUUCAAUGCCGGCCUCGCAGGCGAAAAAGCGCCAAAUGCGUUAUU ....((((...((((......((((((.(..((((((...........))))))..).))))))......))))..)))).((((((((......))))...))))..... ( -25.50) >DroSec_CAF1 3416 111 + 1 UUUUGGCCAUCCAUUUGUUGCUGUUUUUGUUUUGGAUUUUUGCUGUUUGUCUAAUUUUAAAACAAUUUUCAAUGCCGGCCUCGCAGGCGAAAAAGCGCCAAAUGUGUUAUU ...((((....((((((.((((....((((((((((.((..((.....))..)).))))))))))(((((...(((.((...)).)))))))))))).)))))).)))).. ( -24.30) >DroEre_CAF1 1823 111 + 1 UUUUGGCCAUCCAUUUGUUGCUGUUUUUGUUAUGGAUUUUUGCUUUUUGUCUAAAUUUAAAACAAUUUUCAAUGCCGGCCUCGCUGGCGAAAAAGCGCCAAAUGCGUUAUU ...((((....((((((.((((....(((((.(((((((..((.....))..))))))).)))))(((((...((((((...))))))))))))))).)))))).)))).. ( -27.90) >consensus UUUUGGCCAUCCAUUUGUUGCUGUUUUUGUUUUGGAUUUUUGCUUUUUGUCUAAUUUUAAAACAAUUUUCAAUGCCGGCCUCGCAGGCGAAAAAGCGCCAAAUGCGUUAUU ....((((...((((......((((((....((((((...........))))))....))))))......))))..)))).((((((((......))))...))))..... (-23.49 = -23.93 + 0.45)
| Location | 11,401,983 – 11,402,094 |
|---|---|
| Length | 111 |
| Sequences | 3 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 97.00 |
| Mean single sequence MFE | -24.75 |
| Consensus MFE | -23.08 |
| Energy contribution | -23.41 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.87 |
| Structure conservation index | 0.93 |
| SVM decision value | 1.61 |
| SVM RNA-class probability | 0.967547 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11401983 111 - 22224390 AAUAACGCAUUUGGCGCUUUUUCGCCUGCGAGGCCGGCAUUGAAAAUUGUUUUAAAAUUAGACAAAAAGCAAAAAUCCAAAACAAAAACAGCAACAAAUGGAUGGCCAAAA .....((((...((((......)))))))).((((....(((....((((((.......))))))....)))..(((((...................))))))))).... ( -25.21) >DroSec_CAF1 3416 111 - 1 AAUAACACAUUUGGCGCUUUUUCGCCUGCGAGGCCGGCAUUGAAAAUUGUUUUAAAAUUAGACAAACAGCAAAAAUCCAAAACAAAAACAGCAACAAAUGGAUGGCCAAAA .........(((((((((((((((((.((...)).)))...)))))((((((.......))))))..)))....(((((...................))))).)))))). ( -22.41) >DroEre_CAF1 1823 111 - 1 AAUAACGCAUUUGGCGCUUUUUCGCCAGCGAGGCCGGCAUUGAAAAUUGUUUUAAAUUUAGACAAAAAGCAAAAAUCCAUAACAAAAACAGCAACAAAUGGAUGGCCAAAA .....(((...(((((......)))))))).((((....(((....((((((.......))))))....)))..((((((.................)))))))))).... ( -26.63) >consensus AAUAACGCAUUUGGCGCUUUUUCGCCUGCGAGGCCGGCAUUGAAAAUUGUUUUAAAAUUAGACAAAAAGCAAAAAUCCAAAACAAAAACAGCAACAAAUGGAUGGCCAAAA .........(((((((((((...(((.((...)).)))........((((((.......)))))))))))....(((((...................))))).)))))). (-23.08 = -23.41 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:19 2006