Locus 4330

Sequence ID X_DroMel_CAF1
Location 11,399,090 – 11,399,190
Length 100
Max. P 0.638564
window7111

overview

Window 1

Location 11,399,090 – 11,399,190
Length 100
Sequences 4
Columns 100
Reading direction reverse
Mean pairwise identity 95.50
Mean single sequence MFE -22.05
Consensus MFE -20.45
Energy contribution -20.70
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -1.53
Structure conservation index 0.93
SVM decision value 0.22
SVM RNA-class probability 0.638564
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11399090 100 - 22224390
UAAUGUAUUUAGUUGUAUAAUUUAUGCUAGGCCAAAGGGCUUACUUGCAUGCCUUGUGGGCCAAAAAUUGACAUUUAUAUAUUCGUUGAAACAAUGAACA
..(((((.(((((((((((...)))))..((((..(((((..........)))))...))))...))))))....))))).(((((((...))))))).. ( -23.00)
>DroSim_CAF1 23634 100 - 1
UAAUGUAUUUAGUUGUAUAAUUUAUGCUAGGCCAAAGGACUUACUUGCUCGCCUUGUGGGCCAAAAAUUGACAUUUAUAUAUUCGUUGAAACAAUGAACA
..(((((.(((((((((((...)))))..((((.((((.............))))...))))...))))))....))))).(((((((...))))))).. ( -18.52)
>DroEre_CAF1 58480 100 - 1
UAAUGUAUUUAGUUGUAUAAUUUAUGCUAGGCCAAAGGGCUUACUUGCUUGCCUUGCGGGCCAAAAAUUGACAUUUAUAUAUUCGUUGAAACAAUGAACA
..(((((.(((((((((((...)))))..((((..(((((..........)))))...))))...))))))....))))).(((((((...))))))).. ( -23.00)
>DroYak_CAF1 57822 96 - 1
UAAUGU----AGUUGUAUAAUUUAUGCUAGGCCAAAGGGCUUACUUGUUUGCCUUGUGGGCCAAAAAUUGACAUUUAUAUAUUCGUUGAAACAAUGAACA
..((((----((.(((.((((((......((((..(((((..(....)..)))))...))))..))))))))).)))))).(((((((...))))))).. ( -23.70)
>consensus
UAAUGUAUUUAGUUGUAUAAUUUAUGCUAGGCCAAAGGGCUUACUUGCUUGCCUUGUGGGCCAAAAAUUGACAUUUAUAUAUUCGUUGAAACAAUGAACA
.(((((........(((((...)))))..((((..(((((..........)))))...))))........)))))......(((((((...))))))).. (-20.45 = -20.70 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:15 2006