Locus 433

Sequence ID X_DroMel_CAF1
Location 1,261,708 – 1,261,827
Length 119
Max. P 0.872155
window667

overview

Window 7

Location 1,261,708 – 1,261,827
Length 119
Sequences 4
Columns 119
Reading direction forward
Mean pairwise identity 78.16
Mean single sequence MFE -36.19
Consensus MFE -25.03
Energy contribution -26.16
Covariance contribution 1.13
Combinations/Pair 1.07
Mean z-score -1.88
Structure conservation index 0.69
SVM decision value 0.88
SVM RNA-class probability 0.872155
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1261708 119 + 22224390
AGACGGCUGCUGACAUUUCGUUUCGAUUGAACAGUUGCUAUUGCUAAGUGCCGCCUCGGGCGGUGUUACCAACCCCCAACACCCCUCCCCGUCCACCAGUUUCGGGCGGCACUUUCUCC
.((..((.((((.....(((...))).....)))).))..))...(((((((((((((((.((((((..........))))))....))))............)))))))))))..... ( -37.90)
>DroSec_CAF1 15886 116 + 1
AGACGGCUGCUGACAUUUCGCUUCGAUUGAACAGUUGCUAUUGCUAAGUGCCGCCUCGGGCGGUGUUAGCAACCCCCAACCCCC---CGUUUCCACCCGUUUCAGGAGGCACUUCGUCC
.((((((.((((.....(((...))).....)))).)).......(((((((.(((..(((((((..(((..............---.)))..)).)))))..))).))))))))))). ( -36.76)
>DroEre_CAF1 17490 107 + 1
AGCCGCCUGCUGACAUUUCGCUUCGCUCGAACAGUUGCUAUUGCUAAGUGCCGCCUCCGGCGGUGCUACC----UCCACCUCCC---CCC-----GCCAUUUCAGGCGGCACUUUCUCC
.((((((((..(((..((((.......))))..)))((....))..((..(((((...)))))..))...----..........---...-----.......))))))))......... ( -34.50)
>DroYak_CAF1 19435 94 + 1
AGACGGCUGCUGACAUUUCGCUUCGCUUGAACAGUUGCUACUGCUAAGUGCCGCCUCGGGCGGUGUUUCC----C---------------------CCAUUUGAGGCGGCACUUUCUCC
....(((.((((....((((.......)))))))).)))......(((((((((((((((.((.....))----)---------------------))....))))))))))))..... ( -35.60)
>consensus
AGACGGCUGCUGACAUUUCGCUUCGAUUGAACAGUUGCUAUUGCUAAGUGCCGCCUCGGGCGGUGUUACC____CCCAAC_CCC___CCC_____CCCAUUUCAGGCGGCACUUUCUCC
....(((.((((....((((.......)))))))).)))......(((((((((((.((((((.................................)))))).)))))))))))..... (-25.03 = -26.16 +   1.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:28 2006