Locus 4325

Sequence ID X_DroMel_CAF1
Location 11,391,119 – 11,391,249
Length 130
Max. P 0.977278
window7103 window7104

overview

Window 3

Location 11,391,119 – 11,391,217
Length 98
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 76.78
Mean single sequence MFE -26.58
Consensus MFE -10.33
Energy contribution -10.33
Covariance contribution 0.00
Combinations/Pair 1.21
Mean z-score -1.97
Structure conservation index 0.39
SVM decision value 0.47
SVM RNA-class probability 0.748165
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11391119 98 - 22224390
UCCCAUUCUAAUGCU------AAUGCA-----AUGCGAUGCGGAACAAUGUCACUGGCAUUCAUUAGCUAAUUGGGAAUUGCAAAUUGCAAAU-----------UUAAGAAUUUGUUUUG
(((((.......(((------((((.(-----((((.(((((......)).)).).))))))))))))....)))))....((((..((((((-----------(....))))))))))) ( -25.50)
>DroSec_CAF1 44520 98 - 1
UCCCAUUCUAAUGCU------GAUGCA-----AUGCGAUGCGGAACAAUGUCACUGGCAUUCAUUAGCUAAUUGGGAAUUGCAAAUUGCGAAU-----------UUAAGAAUUUGUUUUG
(((((.......(((------((((.(-----((((.(((((......)).)).).))))))))))))....)))))...(((((((.(....-----------....)))))))).... ( -25.40)
>DroEre_CAF1 50700 98 - 1
UCCCAUUCUAAUGCU------AAUGCG-----AUGCGAUGCGGAACAAUGUCACUGGCAUUCAUUAGCUAAUUGGGAAUUGCAAAUUGCGAAU-----------UUAAGAAUUUGUUUUG
(((((.......(((------((((.(-----((((.(((((......)).)).).))))))))))))....)))))...(((((((.(....-----------....)))))))).... ( -24.80)
>DroYak_CAF1 49900 109 - 1
UCCCAUUCGAAUGCUAAUGCUAAUGCGAUGCAAUGCGAUGCGGAACAAUGUCACCAGCAUUCAUUAGCUAAUUGGGAAUUGCAAAUUGUGAAU-----------UUAAGAAUUUGUUUUG
(((((.......(((((((..(((((...(((......)))((..........)).))))))))))))....)))))...(((((((.(....-----------...).))))))).... ( -26.50)
>DroAna_CAF1 32305 104 - 1
UCCCAUUCCGACUCU------AA----------UGGGACGCCGAACAAUGUCACCCGCAUUUGUGAGCUAAUUUGCAAUUGCAAGCAUCGCGUUCGCGUUCGCAUUCGGAUUCUACAUCU
......(((((....------.(----------((((((((.(((((((((.....))))).(((((((....(((....)))))).)))))))))))))).)))))))).......... ( -30.70)
>consensus
UCCCAUUCUAAUGCU______AAUGCA_____AUGCGAUGCGGAACAAUGUCACUGGCAUUCAUUAGCUAAUUGGGAAUUGCAAAUUGCGAAU___________UUAAGAAUUUGUUUUG
(((((......(((....................)))..((.....(((((.....))))).....))....))))).((((.....))))............................. (-10.33 = -10.33 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 4

Location 11,391,148 – 11,391,249
Length 101
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 73.60
Mean single sequence MFE -23.42
Consensus MFE -12.01
Energy contribution -11.77
Covariance contribution -0.24
Combinations/Pair 1.17
Mean z-score -2.20
Structure conservation index 0.51
SVM decision value 1.79
SVM RNA-class probability 0.977278
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11391148 101 - 22224390
AAUCCGAUUUCAAAUUCAAUUCCAAU------UCCAAUUCCCAUUCUAAUGCU------AAUGCA-----AUGCGAUGCGGAACAAUGUCACUGGCAUUCAUUAGCUAAUUGGGAAUU
..........................------...((((((((.......(((------((((.(-----((((.(((((......)).)).).))))))))))))....)))))))) ( -24.30)
>DroSec_CAF1 44549 107 - 1
AAUCCGAUUUCAAUUUCAAUUCCAAUUCCGAUUCCAAUUCCCAUUCUAAUGCU------GAUGCA-----AUGCGAUGCGGAACAAUGUCACUGGCAUUCAUUAGCUAAUUGGGAAUU
...................................((((((((.......(((------((((.(-----((((.(((((......)).)).).))))))))))))....)))))))) ( -24.40)
>DroEre_CAF1 50729 89 - 1
AAUCCGAUU------CCGAUUUC------------AAUUCCCAUUCUAAUGCU------AAUGCG-----AUGCGAUGCGGAACAAUGUCACUGGCAUUCAUUAGCUAAUUGGGAAUU
.........------........------------((((((((.......(((------((((.(-----((((.(((((......)).)).).))))))))))))....)))))))) ( -23.80)
>DroYak_CAF1 49929 106 - 1
AAUCCAAUUCCAAUUCCAAUUUC------------AAUUCCCAUUCGAAUGCUAAUGCUAAUGCGAUGCAAUGCGAUGCGGAACAAUGUCACCAGCAUUCAUUAGCUAAUUGGGAAUU
.......................------------((((((((.......(((((((..(((((...(((......)))((..........)).))))))))))))....)))))))) ( -24.80)
>DroAna_CAF1 32345 96 - 1
AUGCUGAUUCUGAUUCUGAUUCUGAA------UCCGAUUCCCAUUCCGACUCU------AA----------UGGGACGCCGAACAAUGUCACCCGCAUUUGUGAGCUAAUUUGCAAUU
.(((.(((((.(((((.......)))------)).)).(((((((........------))----------))))).((...(((((((.....))).))))..))..))).)))... ( -19.80)
>consensus
AAUCCGAUUCCAAUUCCAAUUCC_A_______UCCAAUUCCCAUUCUAAUGCU______AAUGCA_____AUGCGAUGCGGAACAAUGUCACUGGCAUUCAUUAGCUAAUUGGGAAUU
...................................((((((((......(((....................)))..((.....(((((.....))))).....))....)))))))) (-12.01 = -11.77 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:08 2006