| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 11,375,022 – 11,375,129 |
| Length | 107 |
| Max. P | 0.837995 |
| Location | 11,375,022 – 11,375,129 |
|---|---|
| Length | 107 |
| Sequences | 4 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 72.04 |
| Mean single sequence MFE | -21.68 |
| Consensus MFE | -12.07 |
| Energy contribution | -11.95 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.837995 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11375022 107 - 22224390 AUAUGUUUCAAGGCAGAUAAAGUACACAUAAGAAAGUGCUUAGAAACAAAACCCUUUAAUUUAGAGGUAAUAAAACAGAA--ACACUUUUUCAUUUGUCUAGAUUAAAC ...((((((.(((((.....................))))).))))))......(((((((((((.(.(((.(((.((..--...)).))).)))).))))))))))). ( -17.90) >DroSec_CAF1 35606 107 - 1 AUAUGCUUCAAGGCAGAUAAAGUGCACAUAAGAAAGUGCUUAGAAAUAAAACCCUUUAAUUUAGAGGUAAUAAAACAGAA--AAACAUUUUUAUUUGUCUAGAUUAAAC .......((.((((((((((((.((((........)))).............((((((...)))))).............--......)))))))))))).))...... ( -20.30) >DroEre_CAF1 39440 108 - 1 AUAUGUUUCAAGGGAGAUAGAGCCCACAAAGGAAAGUGCUUAGAAAUAAA-CAAUAAAUUAGGAACAUUUUGUUUCAUAAGUCAAUGCCUUUAUCUUUUCGGGUUCAAC ...((((((....))))))((((((..(((((((((.(((((....))).-..........(((((.....)))))..........)))))).)))))..))))))... ( -25.10) >DroYak_CAF1 40892 108 - 1 AUAUGCUUCAAGGGAGAUAGAGCACACUUAAGAAGGUGCUUAGAAGUAAA-CCCUUCAAUUUGAUGGUAAUAAUUUAUAGUUCUAAGCCUUUAUCUUUUUGCGUUCAAC ..((((....((((((((((((...((((....))))((((((((.((..-.((.((.....)).))(((....))))).))))))))))))))))))))))))..... ( -23.40) >consensus AUAUGCUUCAAGGCAGAUAAAGCACACAUAAGAAAGUGCUUAGAAAUAAA_CCCUUUAAUUUAAAGGUAAUAAAACAGAA__AAACGCCUUUAUCUGUCUAGAUUAAAC .......((.((((((((((((..(((........)))..............(((((.....))))).....................)))))))))))).))...... (-12.07 = -11.95 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:02 2006