Locus 4319

Sequence ID X_DroMel_CAF1
Location 11,373,562 – 11,373,669
Length 107
Max. P 0.580645
window7097

overview

Window 7

Location 11,373,562 – 11,373,669
Length 107
Sequences 4
Columns 108
Reading direction forward
Mean pairwise identity 87.11
Mean single sequence MFE -23.97
Consensus MFE -17.03
Energy contribution -17.54
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.54
Structure conservation index 0.71
SVM decision value 0.09
SVM RNA-class probability 0.580645
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11373562 107 + 22224390
G-GGAAACAACAAAAUGUGUAUAUAUAGUAUAAAAGAAUCAUAAAAAUGCAUCGCCUCAUGUCGCUCCCUUGCGACAUGGGCGUAGUCUAGGGGGCCAACCCCUGAGC
.-(....)........((((((........................))))))((((.((((((((......))))))))))))..(..((((((.....))))))..) ( -35.26)
>DroSec_CAF1 34244 94 + 1
G-GGAAACAACAAAAUGUGUAUAUAUAGUAUAAAAGAAUCAUAAAAAUGCAUCGCCUCAUGUCGCUCCCUUGCGACAUGGGCGUAGUCUAUGGGG-------------
.-(....).........(((((.....)))))......(((((.....((..((((.((((((((......))))))))))))..)).)))))..------------- ( -25.10)
>DroEre_CAF1 38078 94 + 1
G-GGAAACAACAAAAUG--UAUAUAUAGUAUAAAAGAAUCAUAAAAAUGCAUCGCCUGAUGUCGCUCCC-UGCCACAUGGGCGUAGUCUAGAGGG----------AGU
.-(....).......((--(((.....)))))................(((((....))))).((((((-((((.....)))(....)...))))----------))) ( -18.60)
>DroYak_CAF1 39527 96 + 1
AAGAAAACAACAAAAUG--UAUAUAUAGUAUAAAAGAAUCAUAAAAAUGCAACGCCUGAUGUCGCUCCCUUGCCACAUGGGCGUAGUCUAGAGGG----------AGU
.(((...........((--(((.....)))))...................((((((.((((.((......)).))))))))))..)))......----------... ( -16.90)
>consensus
G_GGAAACAACAAAAUG__UAUAUAUAGUAUAAAAGAAUCAUAAAAAUGCAUCGCCUCAUGUCGCUCCCUUGCCACAUGGGCGUAGUCUAGAGGG__________AGU
..(....)...................((((...............))))..(((((.(((((((......))))))))))))......................... (-17.03 = -17.54 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:01 2006