| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 11,373,111 – 11,373,220 |
| Length | 109 |
| Max. P | 0.646129 |
| Location | 11,373,111 – 11,373,220 |
|---|---|
| Length | 109 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.89 |
| Mean single sequence MFE | -23.49 |
| Consensus MFE | -13.52 |
| Energy contribution | -13.53 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.646129 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11373111 109 - 22224390 CUAGUGAAUCACGCCAUGCGCAAGCAAAUUUCA--------ACACUA---UUUCACUUGGUGUGUUACUCAUCUGAUAUCAGGAGGAUUUAAGUCAUUAUUCAUAUCUUAAAUAUAUUUU .((((((..((((((((((....))).......--------......---.......)))))))...(((..(((....))))))........))))))..................... ( -20.85) >DroSec_CAF1 33794 110 - 1 CUAGUGAAUCACGCCAUGCGCAAGCAAAUUUCAACACUUCAACACUA---UUUCACUU-----GUUACUCAUCUGAUAUCAGGAGGAUUUAAGCCAUUAUUCAUAUUUAAA--AUAUUUU ...((((((...((..(((....)))..........((((((((...---.......)-----)))......(((....)))))))......))....)))))).......--....... ( -15.80) >DroEre_CAF1 37643 112 - 1 CCUAUGAAUCACGCCAUGCGCAAGCAAAUUUCCCUACA---UCACUA---UUUCACUUGGCCUGUUACUCAUGUGGUGUUAGGGGGAUUUUGGCCAUUAUUCAUACUUAAA--AUAUUUA ..(((((((...(((((((....)))(((..(((((((---((((..---....((.......)).......)))))).)))))..))).))))....)))))))......--....... ( -33.92) >DroYak_CAF1 39050 115 - 1 CUUGUGAAUCACGCCAUGCGCAAGCAAAUUUCCCUACA---UCACUAUUAUUUCAUUUGCAGGGUUACUCAUCUGGCAUCAGGAGGAUUUUGGCCAUUAUUCAUAUUUAAA--AUAUUUA ..(((((((...(((((((....))).....((((.((---................)).))))...(((..(((....)))))).....))))....)))))))......--....... ( -23.39) >consensus CUAGUGAAUCACGCCAUGCGCAAGCAAAUUUCACUACA___ACACUA___UUUCACUUGG_GUGUUACUCAUCUGAUAUCAGGAGGAUUUAAGCCAUUAUUCAUAUUUAAA__AUAUUUA ...((((((...(((.(((....))).........................................(((..(((....))))))......)))....))))))................ (-13.52 = -13.53 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:00 2006