Locus 4317

Sequence ID X_DroMel_CAF1
Location 11,371,933 – 11,372,039
Length 106
Max. P 0.967291
window7095

overview

Window 5

Location 11,371,933 – 11,372,039
Length 106
Sequences 4
Columns 116
Reading direction reverse
Mean pairwise identity 68.17
Mean single sequence MFE -15.04
Consensus MFE -10.65
Energy contribution -11.53
Covariance contribution 0.88
Combinations/Pair 1.12
Mean z-score -1.51
Structure conservation index 0.71
SVM decision value 1.61
SVM RNA-class probability 0.967291
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11371933 106 - 22224390
--AUAAUGA----AAAAAAAAAACUCAAGGCCGCUGCUUUAAAUGUUGGCGAAUUAUUGCACAGCAUUAGCAGAUGAAAC---AAAAAAAAAGUUGUGCGAAAAA-AAAAAACAAC
--.......----..................(((((((...(((((((((((....)))).)))))))))))).))....---.........(((((........-.....))))) ( -18.82)
>DroSim_CAF1 13886 116 - 1
NNNNNNNNNNNNNNNNNAAAAACCUCAAGGCCGUUGCUUUAAAUGUUGGCGAAUUAUUGCACAGCAUUAGCAGAAGAAAAGAAAAAAAAAAAGCUGUGCGAAAAAUAAAAAACAAG
.............................((((..((.......))))))......(((((((((...........................)))))))))............... ( -17.13)
>DroEre_CAF1 36519 90 - 1
--AUAAAAAU-GUAAAAAAAAACCUCAAGGCCGCUGCUUUAAAUGUUGGCGAAUUAUUUCACAGCUUUAGCAGAGA---------AAA-----AC--GCGCUG----AAAA---AC
--........-.................((((((((((......((((..(((....))).))))...)))))...---------...-----.)--).))).----....---.. ( -13.21)
>DroYak_CAF1 37958 96 - 1
--AAAAAAAUCACAUUAAAAAACCUCAAGGCCGCUGCUUUAAAUGUUGGCGAAUUAUUGCACUCCAGUAGUAGAAA---------AAAAAAAGAC--GCGAUG----AAAA---AC
--.......(((..........((....)).(((((((.........))))..(((((((......)))))))...---------..........--))).))----)...---.. ( -11.00)
>consensus
__AUAAAAA____AAAAAAAAACCUCAAGGCCGCUGCUUUAAAUGUUGGCGAAUUAUUGCACAGCAUUAGCAGAAA_________AAAAAAAGAC__GCGAAA____AAAA___AC
.................................(((((...(((((((((((....)))).))))))))))))........................................... (-10.65 = -11.53 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:59 2006