Locus 4316

Sequence ID X_DroMel_CAF1
Location 11,371,693 – 11,371,791
Length 98
Max. P 0.842548
window7094

overview

Window 4

Location 11,371,693 – 11,371,791
Length 98
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 99.59
Mean single sequence MFE -30.90
Consensus MFE -30.90
Energy contribution -30.90
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.43
Structure conservation index 1.00
SVM decision value 0.76
SVM RNA-class probability 0.842548
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11371693 98 - 22224390
UAUUGGCCUGGAAGAAGUGGCAAAAAUGCGGACGCGGCUGCGAAAGUCGCGUCGGAGUCGCCUCGAAACCGCAAAGAAGACAAUUGCACACUCCACAC
........((((....(((((((...(((((((((((((.....))))))))).(((....))).....))))..(....)..)))).)))))))... ( -30.90)
>DroSec_CAF1 32394 98 - 1
UAUUGGCCUGGAAGAAGUGGCAAAAAUGCGGACGCGGCUGCGAAAGUCGCGUCGGAGUCGCCUCGAAACCGCAAAGAAGACAAUUGCACACUCCACAC
........((((....(((((((...(((((((((((((.....))))))))).(((....))).....))))..(....)..)))).)))))))... ( -30.90)
>DroSim_CAF1 13645 98 - 1
UAUUGGCCUGGAAGAAGUGGCAAAAAUGCGGACGCGGCUGCGAAAGUCGCGUCGGAGUCGCCUCGAAACCGCAAAGAAGACAAUUGCACACUCCACAC
........((((....(((((((...(((((((((((((.....))))))))).(((....))).....))))..(....)..)))).)))))))... ( -30.90)
>DroEre_CAF1 36267 98 - 1
UAUUGGACUGGAAGAAGUGGCAAAAAUGCGGACGCGGCUGCGAAAGUCGCGUCGGAGUCGCCUCGAAACCGCAAAGAAGACAAUUGCACACUCCACAC
........((((....(((((((...(((((((((((((.....))))))))).(((....))).....))))..(....)..)))).)))))))... ( -30.90)
>DroYak_CAF1 37702 98 - 1
UAUUGGCCUGGAAGAAGUGGCAAAAAUGCGGACGCGGCUGCGAAAGUCGCGUCGGAGUCGCCUCGAAACCGCAAAGAAGACAAUUGCACACUCCACAC
........((((....(((((((...(((((((((((((.....))))))))).(((....))).....))))..(....)..)))).)))))))... ( -30.90)
>consensus
UAUUGGCCUGGAAGAAGUGGCAAAAAUGCGGACGCGGCUGCGAAAGUCGCGUCGGAGUCGCCUCGAAACCGCAAAGAAGACAAUUGCACACUCCACAC
........((((....(((((((...(((((((((((((.....))))))))).(((....))).....))))..(....)..)))).)))))))... (-30.90 = -30.90 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:58 2006